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This page was generated on 2025-04-22 13:12 -0400 (Tue, 22 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson3macOS 13.7.1 Venturaarm644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4553
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 207/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.14.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_21
git_last_commit: a7f0a0f
git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  YES
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  YES
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    WARNINGS    OK  YES
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

CHECK results for biodbHmdb on nebbiolo1

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.14.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings biodbHmdb_1.14.0.tar.gz
StartedAt: 2025-04-21 20:23:32 -0400 (Mon, 21 Apr 2025)
EndedAt: 2025-04-21 20:24:20 -0400 (Mon, 21 Apr 2025)
EllapsedTime: 47.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings biodbHmdb_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   ‘bool EntryMaker::closed’ [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   ‘bool EntryMaker::closed’ [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/testthat/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-04-21 20:24:04.094][biodb::testContext]
biodb.INFO [2025-04-21 20:24:04.096][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 20:24:04.097][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-04-21 20:24:04.098][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 20:24:04.099][biodb::testContext]
biodb.INFO [2025-04-21 20:24:04.101][biodb::testThat]
biodb.INFO [2025-04-21 20:24:04.102][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-04-21 20:24:04.103][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:04.103][biodb::testThat]
biodb.INFO [2025-04-21 20:24:04.187][biodb::testContext]
biodb.INFO [2025-04-21 20:24:04.188][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 20:24:04.189][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-04-21 20:24:04.190][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 20:24:04.191][biodb::testContext]
biodb.INFO [2025-04-21 20:24:04.198][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-21 20:24:04.200][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-04-21 20:24:04.207][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:04.208][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-21 20:24:04.209][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-21 20:24:04.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.213][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-21 20:24:04.236][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-21 20:24:04.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.240][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-21 20:24:04.241][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-21 20:24:04.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.245][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-21 20:24:04.246][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-21 20:24:04.247][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-21 20:24:04.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.250][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-21 20:24:04.251][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-21 20:24:04.252][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-21 20:24:04.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.255][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-21 20:24:04.256][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-21 20:24:04.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.260][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-21 20:24:04.261][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-21 20:24:04.262][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-21 20:24:04.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.271][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-21 20:24:04.272][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-21 20:24:04.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.276][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-21 20:24:04.277][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-21 20:24:04.279][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-21 20:24:04.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.283][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-21 20:24:04.284][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-21 20:24:04.285][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-21 20:24:04.286][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-21 20:24:04.287][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-21 20:24:04.288][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-21 20:24:04.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.292][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-21 20:24:04.293][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-21 20:24:04.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.297][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-21 20:24:04.298][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-21 20:24:04.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.302][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-21 20:24:04.303][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-21 20:24:04.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.307][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-21 20:24:04.308][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-21 20:24:04.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.312][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-21 20:24:04.313][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-21 20:24:04.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.317][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-21 20:24:04.318][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-21 20:24:04.322][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-21 20:24:04.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.326][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-21 20:24:04.327][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-21 20:24:04.328][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-21 20:24:04.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.336][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-21 20:24:04.374][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.391][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-21 20:24:04.392][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.394][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:04.395][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.396][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.397][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.398][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.399][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 20:24:04.400][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:04.401][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.402][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-21 20:24:04.403][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:04.404][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.405][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.406][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:04.406][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 20:24:04.406][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 20:24:04.406][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 20:24:04.406][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 20:24:04.407][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:04.408][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.409][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.410][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:04.411][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.412][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.413][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.427][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.428][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:04.429][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:04.430][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.431][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.432][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-21 20:24:04.434][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.435][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 20:24:04.436][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.437][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:04.438][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.440][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.440][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.441][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.443][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 20:24:04.444][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:04.445][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.446][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-21 20:24:04.447][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:04.448][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.449][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.450][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:04.450][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 20:24:04.450][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 20:24:04.450][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 20:24:04.450][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 20:24:04.451][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:04.452][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.453][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.454][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:04.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.456][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.457][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.458][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.459][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:04.460][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:04.461][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.462][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.464][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-21 20:24:04.465][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.467][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-21 20:24:04.468][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.469][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:04.470][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.471][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.472][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.473][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.474][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 20:24:04.475][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:04.476][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.477][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-21 20:24:04.478][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:04.478][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.479][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.480][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.481][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:04.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.484][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:04.485][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.487][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.488][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.489][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:04.489][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:04.490][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.491][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.492][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-21 20:24:04.494][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.495][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 20:24:04.496][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.497][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:04.498][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.499][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.500][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.501][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.502][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 20:24:04.503][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:04.504][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.505][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-21 20:24:04.506][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:04.506][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.507][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.508][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.509][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:04.510][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.511][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.512][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:04.513][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.514][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.515][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.516][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.517][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:04.517][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:04.518][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.519][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.523][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:04.524][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.602][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-21 20:24:04.610][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-21 20:24:04.612][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-21 20:24:04.613][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-21 20:24:04.614][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-21 20:24:04.616][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 20:24:04.617][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-21 20:24:04.618][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-21 20:24:04.619][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-21 20:24:04.621][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 20:24:04.622][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 20:24:04.623][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-21 20:24:04.625][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-21 20:24:04.626][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-21 20:24:04.627][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-21 20:24:04.628][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 20:24:04.630][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-21 20:24:04.631][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-21 20:24:04.632][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-21 20:24:04.634][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-21 20:24:04.635][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-21 20:24:04.636][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-21 20:24:04.638][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-21 20:24:04.639][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-21 20:24:04.640][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-21 20:24:04.642][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-21 20:24:04.643][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-21 20:24:04.644][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-21 20:24:04.646][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-21 20:24:04.647][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-21 20:24:04.648][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-21 20:24:04.650][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-21 20:24:04.651][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-21 20:24:04.652][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-21 20:24:04.654][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-21 20:24:04.655][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-21 20:24:04.656][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-21 20:24:04.658][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-21 20:24:04.659][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-21 20:24:04.660][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-21 20:24:04.662][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-21 20:24:04.663][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-21 20:24:04.664][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-21 20:24:04.666][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-21 20:24:04.667][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-21 20:24:04.668][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-21 20:24:04.670][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-21 20:24:04.671][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-21 20:24:04.672][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-21 20:24:04.674][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-21 20:24:04.675][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-21 20:24:04.676][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-21 20:24:04.678][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-21 20:24:04.679][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-21 20:24:04.680][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-21 20:24:04.682][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-21 20:24:04.683][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-21 20:24:04.684][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-21 20:24:04.686][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-21 20:24:04.687][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-21 20:24:04.688][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-21 20:24:04.690][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-21 20:24:04.691][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-21 20:24:04.692][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-21 20:24:04.694][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-21 20:24:04.695][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-21 20:24:04.696][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-21 20:24:04.698][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-21 20:24:04.699][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-21 20:24:04.700][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-21 20:24:04.702][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-21 20:24:04.703][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-21 20:24:04.704][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-21 20:24:04.706][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-21 20:24:04.707][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-21 20:24:04.708][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-21 20:24:04.710][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-21 20:24:04.711][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-21 20:24:04.712][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-21 20:24:04.714][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-21 20:24:04.715][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-21 20:24:04.716][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-21 20:24:04.718][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-21 20:24:04.723][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-21 20:24:04.725][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-21 20:24:04.728][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:04.729][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.731][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:04.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:04.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:04.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:04.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:04.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:04.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:04.871][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-21 20:24:04.881][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:04.883][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.884][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.885][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.886][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:04.887][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.888][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-21 20:24:04.889][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.890][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.891][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-21 20:24:04.892][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:04.893][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.894][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-21 20:24:04.895][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-21 20:24:04.896][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-21 20:24:04.897][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:04.898][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:04.898][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-21 20:24:04.898][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-21 20:24:04.899][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-21 20:24:04.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.901][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.902][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:04.903][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:04.904][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:04.905][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:04.906][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 20:24:04.906][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-21 20:24:04.907][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:04.908][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:04.909][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:04.910][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:04.916][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-21 20:24:04.917][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 20:24:04.919][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 20:24:04.920][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 20:24:04.922][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 20:24:04.945][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:04.946][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-21 20:24:04.950][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:04.954][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:04.958][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:04.959][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:04.960][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-21 20:24:04.961][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-21 20:24:04.962][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 20:24:04.962][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-21 20:24:04.963][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:04.964][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:04.965][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-21 20:24:04.966][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-21 20:24:04.967][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:04.991][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:04.993][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:04.994][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:04.995][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:04.997][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:04.998][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-21 20:24:05.005][biodb::testThat]
biodb.INFO [2025-04-21 20:24:05.006][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-21 20:24:05.007][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:05.008][biodb::testThat]
biodb.TRACE[2025-04-21 20:24:05.012][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-04-21 20:24:05.014][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 20:24:05.018][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 20:24:05.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:05.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:05.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:05.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:05.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:05.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:05.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:05.047][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.068][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.069][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.101][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.102][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.110][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.111][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.115][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.127][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.128][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.136][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.162][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.163][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.170][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.171][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.178][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:05.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:05.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:05.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:05.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.211][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.219][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.220][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:05.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:05.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:05.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:05.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.235][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:05.236][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.289][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.305][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.309][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:05.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:05.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.374][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.378][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:05.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:05.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:05.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:05.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:05.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:05.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.474][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:05.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:05.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.504][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:05.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:05.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.545][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:05.586][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-21 20:24:05.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 20:24:05.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 20:24:05.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 20:24:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 20:24:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-21 20:24:05.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-21 20:24:05.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-21 20:24:05.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-21 20:24:05.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.661][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:05.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:05.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.701][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.710][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.718][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.719][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.721][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:05.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.744][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.745][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.769][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.770][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:05.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:05.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.814][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.822][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.825][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.851][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:05.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:05.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.866][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.874][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.877][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.878][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.904][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:05.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.918][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.922][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.926][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.930][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.931][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.987][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.988][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:05.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:05.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.013][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.014][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.039][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.040][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.118][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.119][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.137][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.141][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.144][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.148][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.149][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.152][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.163][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.170][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.171][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.177][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.178][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.191][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.192][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.198][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.199][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.205][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.206][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.212][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.213][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.219][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.220][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.225][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:06.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:06.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.246][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.253][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.254][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.264][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.278][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.279][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.285][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.286][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.287][ef$get] fields variable is a list.
biodb.INFO [2025-04-21 20:24:06.294][biodb::testThat]
biodb.INFO [2025-04-21 20:24:06.295][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-21 20:24:06.296][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:06.297][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:06.310][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-21 20:24:06.317][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 20:24:06.322][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:06.323][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 20:24:06.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-21 20:24:06.326][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-21 20:24:06.329][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-21 20:24:06.330][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 20:24:06.353][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 20:24:06.354][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 20:24:06.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:06.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:06.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:06.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:06.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:06.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:06.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:06.368][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.376][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.377][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.380][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.384][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.385][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.392][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.393][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.406][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.412][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.413][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.428][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.436][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.437][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.444][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.445][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.452][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:06.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:06.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:06.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.469][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.492][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.493][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.499][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.507][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:06.508][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.535][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.542][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.546][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:06.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:06.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:06.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:06.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:06.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:06.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.614][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.618][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:06.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:06.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:06.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:06.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:06.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.668][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:06.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:06.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:06.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.706][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.710][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:06.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.729][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:06.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.744][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:06.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.768][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:06.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:06.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.772][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:06.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:06.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.780][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:06.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:06.810][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-21 20:24:06.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-21 20:24:06.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-21 20:24:06.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-21 20:24:06.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-21 20:24:06.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-21 20:24:06.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-21 20:24:06.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-21 20:24:06.829][biodb::testThat]
biodb.INFO [2025-04-21 20:24:06.830][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-21 20:24:06.831][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:06.832][biodb::testThat]
biodb.TRACE[2025-04-21 20:24:06.835][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.838][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:06.839][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-04-21 20:24:06.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:06.878][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-04-21 20:24:06.879][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-21 20:24:06.880][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-21 20:24:06.881][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-21 20:24:06.883][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:06.884][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:06.886][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:06.887][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:06.888][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:06.889][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:06.890][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:06.891][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:06.892][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:06.893][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 20:24:06.894][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 20:24:06.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:06.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:06.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:06.911][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 20:24:06.912][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 20:24:06.913][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-21 20:24:06.924][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.925][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.926][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:06.928][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-04-21 20:24:06.943][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.947][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:06.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:06.957][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-04-21 20:24:07.008][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-21 20:24:07.010][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-21 20:24:07.011][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-21 20:24:07.025][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.026][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.028][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:07.029][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.030][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:07.050][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:07.051][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:07.052][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:07.053][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:07.054][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 20:24:07.055][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 20:24:07.057][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:07.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.065][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:07.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:07.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.069][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:07.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:07.072][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 20:24:07.073][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 20:24:07.074][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-21 20:24:07.086][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.087][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.089][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:07.090][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-04-21 20:24:07.101][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.105][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:07.115][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-04-21 20:24:07.117][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-04-21 20:24:07.117][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-21 20:24:07.118][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-21 20:24:07.120][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.121][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.123][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:07.124][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.125][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:07.126][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:07.127][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:07.128][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:07.129][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:07.130][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 20:24:07.131][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 20:24:07.133][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.137][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.141][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:07.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:07.149][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 20:24:07.150][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 20:24:07.151][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-04-21 20:24:07.165][biodb::testThat]
biodb.INFO [2025-04-21 20:24:07.166][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-21 20:24:07.167][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:07.168][biodb::testThat]
biodb.TRACE[2025-04-21 20:24:07.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:07.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:07.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:07.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:07.204][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-21 20:24:07.205][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-21 20:24:07.206][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-21 20:24:07.207][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.209][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.210][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:07.211][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:07.212][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:07.213][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:07.214][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:07.215][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:07.216][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:07.217][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 20:24:07.218][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 20:24:07.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:07.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:07.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:07.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:07.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:07.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:07.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:07.236][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 20:24:07.236][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-04-21 20:24:07.250][biodb::testThat]
biodb.INFO [2025-04-21 20:24:07.251][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-21 20:24:07.252][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:07.253][biodb::testThat]
biodb.TRACE[2025-04-21 20:24:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 20:24:07.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 20:24:07.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 20:24:07.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 20:24:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-21 20:24:07.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-21 20:24:07.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.284][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-21 20:24:07.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-21 20:24:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.333][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 20:24:07.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 20:24:07.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-21 20:24:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-21 20:24:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-21 20:24:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-21 20:24:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-21 20:24:07.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-21 20:24:07.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:07.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-21 20:24:07.355][biodb::testThat]
biodb.INFO [2025-04-21 20:24:07.356][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-21 20:24:07.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:07.358][biodb::testThat]
biodb.INFO [2025-04-21 20:24:07.365][biodb::testThat]
biodb.INFO [2025-04-21 20:24:07.366][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-21 20:24:07.367][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:07.368][biodb::testThat]
biodb.INFO [2025-04-21 20:24:07.375][biodb::testThat]
biodb.INFO [2025-04-21 20:24:07.376][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-21 20:24:07.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:07.378][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:07.381][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-04-21 20:24:09.051][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-04-21 20:24:09.116][biodb::testThat]
biodb.INFO [2025-04-21 20:24:09.120][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-21 20:24:09.122][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:09.124][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:09.241][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-04-21 20:24:09.321][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:09.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:09.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.330][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:09.331][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:09.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.334][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:09.335][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:09.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.338][ef$get] fields variable is a list.
biodb.INFO [2025-04-21 20:24:09.340][biodb::testThat]
biodb.INFO [2025-04-21 20:24:09.341][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-04-21 20:24:09.342][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:09.343][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:09.345][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-04-21 20:24:09.418][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 20:24:09.420][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.422][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 20:24:09.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-04-21 20:24:09.442][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-21 20:24:09.443][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-21 20:24:09.445][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 20:24:09.446][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.448][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 20:24:09.449][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 20:24:09.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:09.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:09.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:09.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:09.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:09.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:09.463][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:09.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:09.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.468][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:09.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:09.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:09.536][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-21 20:24:09.537][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-04-21 20:24:09.554][biodb::testThat]
biodb.INFO [2025-04-21 20:24:09.555][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-04-21 20:24:09.556][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:09.557][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:09.565][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-04-21 20:24:09.566][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-04-21 20:24:09.567][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 20:24:09.569][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.571][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 20:24:09.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-04-21 20:24:09.574][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-21 20:24:09.575][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-21 20:24:09.576][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 20:24:09.577][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.579][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 20:24:09.580][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 20:24:09.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:09.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:09.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:09.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:09.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:09.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:09.594][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:09.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:09.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.599][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:09.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:09.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:09.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:09.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:09.628][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-21 20:24:09.629][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-04-21 20:24:09.630][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-04-21 20:24:09.650][biodb::testThat]
biodb.INFO [2025-04-21 20:24:09.651][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-04-21 20:24:09.652][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:09.653][biodb::testThat]
biodb.INFO [2025-04-21 20:24:09.679][biodb::testThat]
biodb.INFO [2025-04-21 20:24:09.681][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-04-21 20:24:09.682][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:09.683][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:09.686][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.688][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.689][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:09.690][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.691][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:09.693][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:09.694][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:09.695][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:09.696][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-04-21 20:24:09.704][biodb::testThat]
biodb.INFO [2025-04-21 20:24:09.705][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-04-21 20:24:09.706][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:09.707][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:09.710][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.712][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.713][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:09.715][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:09.716][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:09.717][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:09.718][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:09.719][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:09.720][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-04-21 20:24:09.730][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:09.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:09.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.735][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:09.736][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:09.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:09.739][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:09.740][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:09.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:09.742][ef$get] fields variable is a list.
biodb.INFO [2025-04-21 20:24:09.743][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-21 20:24:09.744][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-21 20:24:09.752][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-21 20:24:09.753][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-21 20:24:09.754][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:09.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:09.756][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:09.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:09.758][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-21 20:24:09.763][biodb::testContext]
biodb.INFO [2025-04-21 20:24:09.764][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 20:24:09.765][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-04-21 20:24:09.771][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 20:24:09.773][biodb::testContext]
biodb.INFO [2025-04-21 20:24:09.777][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-21 20:24:09.779][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-04-21 20:24:09.783][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:09.784][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-21 20:24:09.785][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-21 20:24:09.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.789][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-21 20:24:09.790][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-21 20:24:09.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.793][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-21 20:24:09.794][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-21 20:24:09.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.798][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-21 20:24:09.799][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-21 20:24:09.800][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-21 20:24:09.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.804][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-21 20:24:09.805][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-21 20:24:09.806][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-21 20:24:09.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.809][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-21 20:24:09.810][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-21 20:24:09.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.814][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-21 20:24:09.815][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-21 20:24:09.816][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-21 20:24:09.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.820][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-21 20:24:09.821][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-21 20:24:09.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.824][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-21 20:24:09.825][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-21 20:24:09.827][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-21 20:24:09.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.831][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-21 20:24:09.832][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-21 20:24:09.833][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-21 20:24:09.834][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-21 20:24:09.835][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-21 20:24:09.836][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-21 20:24:09.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.840][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-21 20:24:09.841][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-21 20:24:09.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.845][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-21 20:24:09.846][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-21 20:24:09.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.850][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-21 20:24:09.851][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-21 20:24:09.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.855][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-21 20:24:09.856][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-21 20:24:09.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.860][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-21 20:24:09.861][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-21 20:24:09.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.865][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-21 20:24:09.866][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-21 20:24:09.870][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-21 20:24:09.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.873][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-21 20:24:09.874][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-21 20:24:09.876][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-21 20:24:09.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:09.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:09.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:09.879][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-21 20:24:09.881][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.882][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-21 20:24:09.883][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.884][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:09.886][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.893][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.894][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.896][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.897][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 20:24:09.898][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:09.899][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.900][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-21 20:24:09.901][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:09.902][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.903][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.904][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:09.904][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 20:24:09.904][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 20:24:09.904][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 20:24:09.904][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 20:24:09.905][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:09.906][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:09.906][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:09.907][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:09.908][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:09.909][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:09.910][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.911][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.912][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:09.913][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:09.914][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.915][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.916][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-21 20:24:09.918][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.919][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 20:24:09.920][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.921][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:09.922][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.923][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.925][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.926][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.927][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 20:24:09.928][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:09.929][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.930][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-21 20:24:09.931][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:09.932][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.933][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.934][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:09.934][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 20:24:09.934][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 20:24:09.934][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 20:24:09.934][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 20:24:09.935][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:09.936][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:09.937][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:09.938][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:09.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:09.939][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:09.940][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.941][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.942][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:09.943][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:09.944][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.945][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.947][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-21 20:24:09.948][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.949][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-21 20:24:09.951][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.952][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:09.953][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.954][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.955][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.956][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.957][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 20:24:09.958][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:09.959][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.960][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-21 20:24:09.961][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:09.962][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.963][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.964][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.965][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:09.966][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:09.967][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:09.968][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:09.969][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:09.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:09.971][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.972][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.973][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:09.974][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:09.975][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.976][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.977][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-21 20:24:09.979][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.980][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 20:24:09.981][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.982][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:09.983][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.984][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.985][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.986][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:09.987][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 20:24:09.988][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:09.989][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:09.990][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-21 20:24:09.991][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:09.992][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.993][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:09.994][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:09.995][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:09.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:09.997][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:09.998][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:09.999][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:10.000][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:10.007][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:10.008][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:10.009][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:10.010][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:10.011][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:10.012][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:10.013][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:10.014][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.094][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-21 20:24:10.095][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-21 20:24:10.097][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-21 20:24:10.098][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-21 20:24:10.100][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-21 20:24:10.101][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 20:24:10.102][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-21 20:24:10.104][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-21 20:24:10.105][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-21 20:24:10.107][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 20:24:10.108][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 20:24:10.109][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-21 20:24:10.111][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-21 20:24:10.117][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-21 20:24:10.119][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-21 20:24:10.121][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 20:24:10.122][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-21 20:24:10.124][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-21 20:24:10.125][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-21 20:24:10.126][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-21 20:24:10.128][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-21 20:24:10.129][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-21 20:24:10.130][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-21 20:24:10.132][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-21 20:24:10.133][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-21 20:24:10.134][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-21 20:24:10.136][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-21 20:24:10.137][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-21 20:24:10.138][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-21 20:24:10.140][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-21 20:24:10.141][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-21 20:24:10.142][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-21 20:24:10.144][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-21 20:24:10.145][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-21 20:24:10.146][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-21 20:24:10.148][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-21 20:24:10.149][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-21 20:24:10.150][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-21 20:24:10.152][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-21 20:24:10.153][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-21 20:24:10.154][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-21 20:24:10.156][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-21 20:24:10.157][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-21 20:24:10.159][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-21 20:24:10.160][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-21 20:24:10.161][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-21 20:24:10.163][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-21 20:24:10.164][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-21 20:24:10.166][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-21 20:24:10.167][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-21 20:24:10.168][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-21 20:24:10.170][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-21 20:24:10.171][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-21 20:24:10.173][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-21 20:24:10.174][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-21 20:24:10.176][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-21 20:24:10.177][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-21 20:24:10.179][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-21 20:24:10.180][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-21 20:24:10.182][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-21 20:24:10.184][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-21 20:24:10.185][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-21 20:24:10.187][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-21 20:24:10.189][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-21 20:24:10.190][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-21 20:24:10.192][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-21 20:24:10.193][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-21 20:24:10.194][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-21 20:24:10.196][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-21 20:24:10.197][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-21 20:24:10.199][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-21 20:24:10.200][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-21 20:24:10.202][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-21 20:24:10.203][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-21 20:24:10.204][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-21 20:24:10.206][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-21 20:24:10.207][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-21 20:24:10.209][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-21 20:24:10.210][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-21 20:24:10.212][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-21 20:24:10.213][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-21 20:24:10.214][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-21 20:24:10.216][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-21 20:24:10.217][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-21 20:24:10.219][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-21 20:24:10.220][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:10.228][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.230][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:10.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:10.346][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-21 20:24:10.347][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:10.349][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:10.350][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-21 20:24:10.351][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:10.352][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:10.353][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:10.354][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-21 20:24:10.355][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:10.356][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:10.357][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-21 20:24:10.358][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:10.359][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:10.360][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-21 20:24:10.361][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-21 20:24:10.362][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-21 20:24:10.363][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:10.364][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:10.364][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-21 20:24:10.364][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-21 20:24:10.365][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-21 20:24:10.366][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:10.367][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:10.368][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:10.369][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:10.370][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:10.371][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:10.372][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 20:24:10.372][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-21 20:24:10.373][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:10.374][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:10.375][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:10.376][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:10.377][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-21 20:24:10.379][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 20:24:10.380][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 20:24:10.382][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 20:24:10.384][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 20:24:10.387][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:10.388][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-21 20:24:10.389][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:10.391][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:10.392][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:10.393][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:10.394][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-21 20:24:10.395][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-21 20:24:10.396][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 20:24:10.396][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-21 20:24:10.397][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:10.398][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:10.399][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-21 20:24:10.400][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-21 20:24:10.401][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:10.419][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:10.421][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:10.431][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:10.436][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:10.438][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:10.440][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-21 20:24:10.443][biodb::testThat]
biodb.INFO [2025-04-21 20:24:10.445][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-04-21 20:24:10.446][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:10.447][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:10.456][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:10.458][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:10.460][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:10.461][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:10.462][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:10.491][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:10.493][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:10.495][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:10.497][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:10.502][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-04-21 20:24:10.508][biodb::testThat]
biodb.INFO [2025-04-21 20:24:10.509][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-04-21 20:24:10.510][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:10.511][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:10.513][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-21 20:24:10.515][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 20:24:10.516][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:10.518][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 20:24:10.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-21 20:24:10.522][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-21 20:24:10.524][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-21 20:24:10.525][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 20:24:10.527][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 20:24:10.528][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 20:24:10.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:10.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:10.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:10.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:10.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:10.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:10.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:10.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.553][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.554][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.558][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.564][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.565][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.569][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.574][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.575][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.579][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.595][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.596][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.605][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.608][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.613][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.625][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.626][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.633][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.634][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.641][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:10.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:10.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:10.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:10.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:10.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:10.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.657][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.658][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.682][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:10.683][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:10.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.686][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:10.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:10.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:10.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:10.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:10.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:10.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.698][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:10.699][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:10.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.718][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.726][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:10.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.734][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.738][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.742][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:10.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:10.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:10.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:10.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:10.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:10.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:10.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:10.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:10.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.811][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:10.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:10.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:10.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:10.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:10.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:10.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:10.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:10.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:10.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:10.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:10.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:10.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:10.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.905][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.909][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:10.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:10.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:10.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:10.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:10.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.925][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:10.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.945][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:10.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:10.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:10.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:10.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.969][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:10.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.973][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:10.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:10.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.981][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:10.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:10.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:10.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:10.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:10.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:11.008][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-21 20:24:11.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-21 20:24:11.025][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-21 20:24:11.026][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-21 20:24:11.027][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-21 20:24:11.028][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-21 20:24:11.029][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.031][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.033][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-21 20:24:11.037][biodb::testContext]
biodb.INFO [2025-04-21 20:24:11.038][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 20:24:11.039][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-04-21 20:24:11.040][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-21 20:24:11.041][biodb::testContext]
biodb.INFO [2025-04-21 20:24:11.049][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-21 20:24:11.051][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-04-21 20:24:11.055][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:11.056][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-21 20:24:11.057][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-21 20:24:11.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.060][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-21 20:24:11.061][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-21 20:24:11.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.065][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-21 20:24:11.066][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-21 20:24:11.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.069][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-21 20:24:11.070][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-21 20:24:11.071][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-21 20:24:11.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.075][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-21 20:24:11.075][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-21 20:24:11.076][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-21 20:24:11.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.080][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-21 20:24:11.081][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-21 20:24:11.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.085][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-21 20:24:11.085][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-21 20:24:11.086][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-21 20:24:11.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.090][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-21 20:24:11.091][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-21 20:24:11.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.094][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-21 20:24:11.095][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-21 20:24:11.096][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-21 20:24:11.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.100][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-21 20:24:11.101][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-21 20:24:11.102][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-21 20:24:11.103][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-21 20:24:11.104][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-21 20:24:11.105][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-21 20:24:11.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.108][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-21 20:24:11.109][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-21 20:24:11.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.113][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-21 20:24:11.114][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-21 20:24:11.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.117][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-21 20:24:11.118][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-21 20:24:11.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.122][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-21 20:24:11.123][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-21 20:24:11.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.127][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-21 20:24:11.128][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-21 20:24:11.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.131][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-21 20:24:11.132][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-21 20:24:11.135][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-21 20:24:11.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.139][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-21 20:24:11.140][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-21 20:24:11.141][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-21 20:24:11.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.145][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-21 20:24:11.147][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.148][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-21 20:24:11.149][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.150][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:11.155][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.156][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.157][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.158][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.159][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 20:24:11.160][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:11.161][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.162][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-21 20:24:11.163][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:11.164][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.165][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.166][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:11.166][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 20:24:11.166][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 20:24:11.166][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 20:24:11.166][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 20:24:11.167][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:11.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.169][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:11.170][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.171][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.172][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.173][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.174][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:11.175][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:11.176][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.177][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.178][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-21 20:24:11.180][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.181][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 20:24:11.182][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.183][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:11.184][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.184][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.185][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.186][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.187][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 20:24:11.188][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:11.189][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.190][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-21 20:24:11.191][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:11.192][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.193][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.194][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:11.194][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-21 20:24:11.194][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-21 20:24:11.194][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-21 20:24:11.194][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-21 20:24:11.195][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:11.196][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.197][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.198][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:11.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.201][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.202][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.203][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:11.204][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:11.205][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.206][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.207][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-21 20:24:11.209][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.209][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-21 20:24:11.210][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.211][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:11.212][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.213][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.214][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.215][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.216][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-21 20:24:11.217][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:11.218][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.219][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-21 20:24:11.220][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:11.221][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.222][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.223][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.224][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:11.225][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.227][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:11.228][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.229][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.230][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.230][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.231][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:11.232][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:11.233][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.234][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.235][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-21 20:24:11.237][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.238][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-21 20:24:11.239][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.240][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:11.241][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.242][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.243][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.244][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.245][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-21 20:24:11.246][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:11.247][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.248][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-21 20:24:11.249][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:11.250][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.251][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.252][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.257][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-21 20:24:11.258][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.259][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.260][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:11.261][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.262][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.263][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.264][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.265][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:11.265][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:11.266][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.267][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.269][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:11.269][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.345][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-21 20:24:11.347][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-21 20:24:11.348][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-21 20:24:11.350][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-21 20:24:11.351][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-21 20:24:11.352][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 20:24:11.354][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-21 20:24:11.360][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-21 20:24:11.362][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-21 20:24:11.363][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 20:24:11.365][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 20:24:11.366][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-21 20:24:11.367][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-21 20:24:11.369][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-21 20:24:11.370][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-21 20:24:11.371][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 20:24:11.372][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-21 20:24:11.374][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-21 20:24:11.375][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-21 20:24:11.376][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-21 20:24:11.378][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-21 20:24:11.379][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-21 20:24:11.380][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-21 20:24:11.382][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-21 20:24:11.383][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-21 20:24:11.384][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-21 20:24:11.386][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-21 20:24:11.387][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-21 20:24:11.388][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-21 20:24:11.390][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-21 20:24:11.391][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-21 20:24:11.393][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-21 20:24:11.394][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-21 20:24:11.395][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-21 20:24:11.397][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-21 20:24:11.398][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-21 20:24:11.399][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-21 20:24:11.401][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-21 20:24:11.402][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-21 20:24:11.403][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-21 20:24:11.405][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-21 20:24:11.406][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-21 20:24:11.407][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-21 20:24:11.409][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-21 20:24:11.410][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-21 20:24:11.411][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-21 20:24:11.413][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-21 20:24:11.414][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-21 20:24:11.415][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-21 20:24:11.417][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-21 20:24:11.418][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-21 20:24:11.419][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-21 20:24:11.421][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-21 20:24:11.422][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-21 20:24:11.423][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-21 20:24:11.425][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-21 20:24:11.426][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-21 20:24:11.428][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-21 20:24:11.429][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-21 20:24:11.430][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-21 20:24:11.432][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-21 20:24:11.433][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-21 20:24:11.434][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-21 20:24:11.436][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-21 20:24:11.437][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-21 20:24:11.438][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-21 20:24:11.440][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-21 20:24:11.441][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-21 20:24:11.442][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-21 20:24:11.444][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-21 20:24:11.445][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-21 20:24:11.446][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-21 20:24:11.448][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-21 20:24:11.449][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-21 20:24:11.450][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-21 20:24:11.452][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-21 20:24:11.453][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-21 20:24:11.460][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-21 20:24:11.461][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-21 20:24:11.463][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-21 20:24:11.464][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-21 20:24:11.465][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-21 20:24:11.467][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-21 20:24:11.468][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-21 20:24:11.470][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-21 20:24:11.471][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-21 20:24:11.471][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.473][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-21 20:24:11.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:11.583][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-21 20:24:11.584][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:11.586][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.587][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.588][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.589][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-21 20:24:11.590][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.591][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-21 20:24:11.592][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.594][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-21 20:24:11.595][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-21 20:24:11.596][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.597][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-21 20:24:11.598][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-21 20:24:11.599][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-21 20:24:11.600][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-21 20:24:11.601][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-21 20:24:11.601][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-21 20:24:11.601][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-21 20:24:11.602][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-21 20:24:11.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.605][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-21 20:24:11.606][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-21 20:24:11.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-21 20:24:11.607][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-21 20:24:11.608][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 20:24:11.608][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-21 20:24:11.609][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:11.610][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:11.611][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-21 20:24:11.612][self$setPropertyValue]
biodb.DEBUG[2025-04-21 20:24:11.613][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-21 20:24:11.615][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-21 20:24:11.616][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-21 20:24:11.618][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-21 20:24:11.619][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-21 20:24:11.622][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:11.623][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-21 20:24:11.625][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:11.626][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:11.627][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:11.628][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:11.629][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-21 20:24:11.630][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-21 20:24:11.631][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-21 20:24:11.631][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-21 20:24:11.632][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-21 20:24:11.633][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-21 20:24:11.634][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-21 20:24:11.635][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-21 20:24:11.636][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-21 20:24:11.637][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:11.638][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:11.639][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:11.641][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-21 20:24:11.642][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-21 20:24:11.643][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-21 20:24:11.644][biodb::testThat]
biodb.INFO [2025-04-21 20:24:11.645][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-04-21 20:24:11.646][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-21 20:24:11.647][biodb::testThat]
biodb.DEBUG[2025-04-21 20:24:11.649][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-21 20:24:11.650][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-21 20:24:11.651][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-21 20:24:11.654][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:11.655][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:11.661][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:11.662][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:11.664][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:11.665][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:11.666][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:11.667][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:11.668][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:11.669][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 20:24:11.669][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-04-21 20:24:11.671][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-21 20:24:11.672][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 20:24:11.674][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:11.675][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 20:24:11.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-21 20:24:11.678][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-21 20:24:11.680][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-21 20:24:11.681][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 20:24:11.682][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 20:24:11.683][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 20:24:11.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:11.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:11.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:11.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:11.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:11.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:11.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:11.697][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.705][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:11.706][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:11.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.709][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:11.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:11.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.713][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.714][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.722][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.723][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.738][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.739][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.746][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:11.747][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:11.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.750][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:11.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:11.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:11.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:11.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:11.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.763][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.769][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.777][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.778][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.785][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:11.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:11.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:11.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:11.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:11.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:11.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:11.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:11.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:11.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:11.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:11.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:11.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:11.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.817][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:11.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:11.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:11.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.825][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:11.826][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:11.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.830][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:11.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:11.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:11.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:11.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:11.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.842][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:11.843][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:11.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.846][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:11.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:11.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:11.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:11.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.861][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.865][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.879][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.883][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.887][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.891][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:11.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:11.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:11.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:11.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:11.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:11.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:11.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:11.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:11.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.957][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:11.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:11.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:11.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:11.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:11.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:11.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:11.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:11.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:11.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:11.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:11.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:11.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:11.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:11.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:11.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:11.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.005][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.052][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.056][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:12.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:12.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:12.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:12.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:12.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:12.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:12.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.121][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.132][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:12.160][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-21 20:24:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.169][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:12.177][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 20:24:12.178][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 20:24:12.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:12.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:12.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:12.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:12.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:12.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:12.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:12.210][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-21 20:24:12.212][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-21 20:24:12.213][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:12.215][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-21 20:24:12.217][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-21 20:24:12.218][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-21 20:24:12.220][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-21 20:24:12.221][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-21 20:24:12.222][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-21 20:24:12.223][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-21 20:24:12.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:12.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:12.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:12.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:12.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:12.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:12.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:12.237][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.245][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.246][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.249][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.253][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.254][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.257][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.261][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.262][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.278][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.279][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.287][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.290][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.302][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.308][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.316][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.317][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:12.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:12.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:12.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:12.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:12.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.340][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.357][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.365][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.366][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:12.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:12.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.381][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:12.383][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:12.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-21 20:24:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.402][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.410][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-21 20:24:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-21 20:24:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-21 20:24:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-21 20:24:12.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-21 20:24:12.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-21 20:24:12.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:12.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:12.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-21 20:24:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.492][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.496][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-21 20:24:12.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-21 20:24:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:12.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:12.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:12.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-21 20:24:12.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-21 20:24:12.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.548][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-21 20:24:12.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-21 20:24:12.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-21 20:24:12.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.588][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.592][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.596][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-21 20:24:12.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:12.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:12.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-21 20:24:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-21 20:24:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.634][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-21 20:24:12.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-21 20:24:12.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-21 20:24:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-21 20:24:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.663][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.671][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-21 20:24:12.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-21 20:24:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-21 20:24:12.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:12.699][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-21 20:24:12.700][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.704][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.708][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:12.716][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 20:24:12.717][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:12.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:12.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:12.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:12.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:12.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:12.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:12.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:12.732][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-21 20:24:12.733][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-21 20:24:12.738][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-21 20:24:12.741][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:12.742][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:12.744][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:12.745][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:12.746][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:12.748][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:12.749][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:12.750][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:12.751][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:12.752][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 20:24:12.752][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 20:24:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.758][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:12.781][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 20:24:12.782][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 20:24:12.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:12.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:12.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:12.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:12.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:12.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:12.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.801][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.805][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.809][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.812][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.816][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:12.820][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-21 20:24:12.821][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 20:24:12.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:12.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:12.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:12.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:12.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:12.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:12.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-21 20:24:12.835][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-21 20:24:12.836][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-21 20:24:12.837][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-21 20:24:12.839][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:12.840][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:12.846][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-21 20:24:12.847][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-21 20:24:12.848][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-21 20:24:12.850][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-21 20:24:12.851][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-21 20:24:12.852][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-21 20:24:12.853][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-21 20:24:12.854][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-21 20:24:12.855][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-21 20:24:12.856][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.860][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.864][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.876][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:12.883][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-21 20:24:12.884][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-04-21 20:24:12.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:12.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:12.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:12.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:12.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:12.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:12.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-21 20:24:12.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.903][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.911][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-21 20:24:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-21 20:24:12.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-21 20:24:12.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-21 20:24:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-21 20:24:12.922][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-21 20:24:12.923][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-21 20:24:12.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-21 20:24:12.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:12.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:12.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:12.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:12.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:12.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-21 20:24:12.940][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-21 20:24:12.941][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-21 20:24:12.942][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-21 20:24:12.943][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-21 20:24:12.944][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-21 20:24:12.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-21 20:24:12.945][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-21 20:24:12.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-21 20:24:12.951][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-21 20:24:12.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  8.631   0.463  10.741

Example timings