Pierrick Roger
| Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_21 |
| git_last_commit: a7f0a0f |
| git_last_commit_date: 2025-04-15 12:42:50 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-04-22 13:19 -0400 (Tue, 22 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 207/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.14.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: biodbHmdb |
| Version: 1.14.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz |
| StartedAt: 2025-04-22 06:48:31 -0000 (Tue, 22 Apr 2025) |
| EndedAt: 2025-04-22 06:50:30 -0000 (Tue, 22 Apr 2025) |
| EllapsedTime: 119.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
* checking installed package size ... INFO
installed size is 7.3Mb
sub-directories of 1Mb or more:
libs 6.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
‘/home/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c FileEntryMaker.cpp -o FileEntryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c TagDetector.cpp -o TagDetector.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c XmlSplitter.cpp -o XmlSplitter.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c extractXmlEntries.cpp -o extractXmlEntries.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c test-100-TagDetector.cpp -o test-100-TagDetector.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/Rcpp/include' -I'/home/biocbuild/R/R-devel_2025-02-19/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c test-runner.cpp -o test-runner.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-04-22 06:50:08.376][biodb::testContext]
biodb.INFO [2025-04-22 06:50:08.378][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-22 06:50:08.380][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-04-22 06:50:08.381][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-22 06:50:08.382][biodb::testContext]
biodb.INFO [2025-04-22 06:50:08.384][biodb::testThat]
biodb.INFO [2025-04-22 06:50:08.386][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2025-04-22 06:50:08.387][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:08.388][biodb::testThat]
biodb.INFO [2025-04-22 06:50:08.513][biodb::testContext]
biodb.INFO [2025-04-22 06:50:08.515][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-22 06:50:08.516][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-04-22 06:50:08.517][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-22 06:50:08.518][biodb::testContext]
biodb.INFO [2025-04-22 06:50:08.529][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-22 06:50:08.531][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-04-22 06:50:08.540][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:08.542][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-22 06:50:08.543][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-22 06:50:08.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.548][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-22 06:50:08.585][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-22 06:50:08.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.590][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-22 06:50:08.592][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-22 06:50:08.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.597][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-22 06:50:08.598][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-22 06:50:08.600][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-22 06:50:08.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.605][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-22 06:50:08.606][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-22 06:50:08.608][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-22 06:50:08.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.613][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-22 06:50:08.614][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-22 06:50:08.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.620][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-22 06:50:08.621][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-22 06:50:08.623][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-22 06:50:08.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.628][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-22 06:50:08.629][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-22 06:50:08.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.634][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-22 06:50:08.636][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-22 06:50:08.637][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-22 06:50:08.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.643][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-22 06:50:08.644][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-22 06:50:08.645][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-22 06:50:08.647][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-22 06:50:08.648][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-22 06:50:08.650][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-22 06:50:08.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.655][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-22 06:50:08.656][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-22 06:50:08.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.662][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-22 06:50:08.663][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-22 06:50:08.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.668][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-22 06:50:08.670][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-22 06:50:08.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.675][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-22 06:50:08.676][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-22 06:50:08.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.681][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-22 06:50:08.683][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-22 06:50:08.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.688][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-22 06:50:08.690][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-22 06:50:08.694][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-22 06:50:08.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.699][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-22 06:50:08.701][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-22 06:50:08.702][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-22 06:50:08.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.710][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-22 06:50:08.758][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.782][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-22 06:50:08.783][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.785][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:08.786][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.787][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.789][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.790][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.791][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-22 06:50:08.793][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:08.794][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.796][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-22 06:50:08.797][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:08.799][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.800][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.801][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:08.801][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-22 06:50:08.801][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-22 06:50:08.801][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-22 06:50:08.801][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-22 06:50:08.803][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:08.804][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:08.805][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:08.807][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:08.808][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:08.809][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:08.811][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.820][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.821][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:08.823][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:08.824][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.825][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.827][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-22 06:50:08.829][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.831][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-22 06:50:08.833][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.834][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:08.835][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.837][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.838][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.839][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.841][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-22 06:50:08.842][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:08.844][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.845][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-22 06:50:08.846][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:08.848][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.849][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.851][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:08.851][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-22 06:50:08.851][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-22 06:50:08.851][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-22 06:50:08.851][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-22 06:50:08.852][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:08.853][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:08.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:08.856][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:08.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:08.859][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:08.860][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.861][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.863][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:08.864][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:08.865][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.867][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.868][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-22 06:50:08.871][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.872][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-22 06:50:08.874][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.875][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:08.876][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.878][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.879][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.881][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.882][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-22 06:50:08.883][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:08.885][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.886][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-22 06:50:08.887][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:08.889][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.890][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.892][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.893][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:08.894][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:08.896][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:08.897][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:08.898][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:08.900][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:08.901][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.902][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.904][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:08.905][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:08.906][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.908][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.909][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-22 06:50:08.912][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.913][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-22 06:50:08.915][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.916][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:08.917][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.919][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.920][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.921][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.923][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-22 06:50:08.924][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:08.926][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.927][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-22 06:50:08.928][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:08.930][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.931][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:08.932][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.934][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:08.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:08.936][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:08.938][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:08.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:08.940][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:08.942][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:08.943][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.944][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:08.946][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:08.947][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:08.948][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:08.953][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:08.955][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:08.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:08.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:08.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:08.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:08.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:08.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:08.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:08.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:08.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:08.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:08.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:08.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:08.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:08.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:08.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:08.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:08.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.061][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-22 06:50:09.074][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-22 06:50:09.076][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-22 06:50:09.078][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-22 06:50:09.080][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-22 06:50:09.081][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-22 06:50:09.083][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-22 06:50:09.085][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-22 06:50:09.087][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-22 06:50:09.089][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-22 06:50:09.091][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-22 06:50:09.093][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-22 06:50:09.095][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-22 06:50:09.097][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-22 06:50:09.099][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-22 06:50:09.101][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-22 06:50:09.102][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-22 06:50:09.104][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-22 06:50:09.106][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-22 06:50:09.108][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-22 06:50:09.110][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-22 06:50:09.112][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-22 06:50:09.114][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-22 06:50:09.116][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-22 06:50:09.118][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-22 06:50:09.120][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-22 06:50:09.122][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-22 06:50:09.124][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-22 06:50:09.126][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-22 06:50:09.128][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-22 06:50:09.130][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-22 06:50:09.132][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-22 06:50:09.134][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-22 06:50:09.136][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-22 06:50:09.137][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-22 06:50:09.139][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-22 06:50:09.141][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-22 06:50:09.143][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-22 06:50:09.145][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-22 06:50:09.147][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-22 06:50:09.149][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-22 06:50:09.151][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-22 06:50:09.153][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-22 06:50:09.155][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-22 06:50:09.157][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-22 06:50:09.159][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-22 06:50:09.161][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-22 06:50:09.163][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-22 06:50:09.165][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-22 06:50:09.167][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-22 06:50:09.169][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-22 06:50:09.171][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-22 06:50:09.172][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-22 06:50:09.174][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-22 06:50:09.177][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-22 06:50:09.179][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-22 06:50:09.181][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-22 06:50:09.183][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-22 06:50:09.185][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-22 06:50:09.187][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-22 06:50:09.189][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-22 06:50:09.191][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-22 06:50:09.193][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-22 06:50:09.195][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-22 06:50:09.197][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-22 06:50:09.199][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-22 06:50:09.201][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-22 06:50:09.203][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-22 06:50:09.204][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-22 06:50:09.206][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-22 06:50:09.208][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-22 06:50:09.210][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-22 06:50:09.212][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-22 06:50:09.214][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-22 06:50:09.216][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-22 06:50:09.218][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-22 06:50:09.220][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-22 06:50:09.222][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-22 06:50:09.224][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-22 06:50:09.226][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-22 06:50:09.228][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-22 06:50:09.230][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-22 06:50:09.232][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-22 06:50:09.240][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-22 06:50:09.242][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-22 06:50:09.246][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:09.248][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.250][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:09.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:09.445][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-22 06:50:09.459][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:09.462][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:09.464][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-22 06:50:09.465][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:09.466][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:09.468][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:09.469][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-22 06:50:09.470][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:09.472][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:09.473][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-22 06:50:09.474][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:09.476][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:09.477][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-22 06:50:09.478][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-22 06:50:09.480][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-22 06:50:09.481][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:09.483][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:09.483][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-22 06:50:09.483][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-22 06:50:09.484][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-22 06:50:09.485][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:09.487][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:09.488][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:09.489][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:09.490][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:09.492][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:09.493][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-22 06:50:09.493][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-22 06:50:09.495][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:09.496][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:09.497][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:09.498][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:09.507][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-22 06:50:09.509][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-22 06:50:09.512][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-22 06:50:09.514][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-22 06:50:09.516][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-22 06:50:09.547][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:09.549][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-22 06:50:09.554][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:09.559][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:09.564][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:09.566][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:09.568][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-22 06:50:09.569][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-22 06:50:09.571][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-22 06:50:09.571][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-22 06:50:09.572][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:09.573][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:09.574][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-22 06:50:09.576][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-22 06:50:09.577][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:09.612][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:09.614][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:09.615][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:09.617][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:09.619][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:09.620][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-22 06:50:09.630][biodb::testThat]
biodb.INFO [2025-04-22 06:50:09.632][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-04-22 06:50:09.633][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:09.634][biodb::testThat]
biodb.TRACE[2025-04-22 06:50:09.641][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-04-22 06:50:09.643][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-22 06:50:09.648][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-22 06:50:09.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:09.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:09.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:09.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:09.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:09.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:09.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:09.685][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:09.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:09.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:09.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:09.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.715][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:09.716][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:09.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.758][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:09.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.764][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:09.765][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:09.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.770][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:09.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:09.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.776][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:09.777][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:09.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.782][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:09.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:09.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:09.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:09.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:09.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.799][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:09.800][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:09.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:09.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:09.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:09.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:09.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:09.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:09.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:09.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.844][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:09.845][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:09.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.855][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:09.857][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:09.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:09.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:09.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.867][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:09.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:09.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:09.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:09.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:09.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:09.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:09.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:09.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:09.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:09.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:09.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:09.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:09.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:09.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:09.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:09.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.925][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:09.927][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:09.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.936][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:09.937][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:09.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:09.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.947][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:09.949][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:09.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.951][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.953][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:09.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:09.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:09.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:09.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:09.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:09.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:09.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:09.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.030][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.041][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.047][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:10.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:10.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:10.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:10.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.057][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:10.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:10.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:10.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:10.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:10.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:10.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:10.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:10.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:10.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:10.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:10.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:10.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:10.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:10.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:10.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.144][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:10.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:10.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.150][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:10.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:10.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:10.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:10.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:10.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:10.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:10.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:10.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:10.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:10.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:10.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:10.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:10.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.211][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.216][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:10.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:10.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:10.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:10.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:10.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:10.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.284][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.289][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:10.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:10.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:10.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:10.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:10.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:10.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.317][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.339][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:10.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.398][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.404][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.415][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:10.461][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-22 06:50:10.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-22 06:50:10.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-22 06:50:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-22 06:50:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-22 06:50:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-22 06:50:10.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-22 06:50:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-22 06:50:10.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-22 06:50:10.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.565][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:10.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.610][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:10.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.638][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.658][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.660][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:10.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.696][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.698][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:10.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.858][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:10.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:10.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:10.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:10.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:10.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:10.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.897][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:10.898][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:10.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.901][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.902][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:10.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:10.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:10.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:10.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:10.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:10.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:10.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:10.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.937][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:10.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:10.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:10.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.959][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.965][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.976][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.978][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.982][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:10.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:10.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.054][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.062][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.098][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.100][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.137][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.138][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:11.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:11.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:11.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:11.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:11.176][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:11.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:11.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:11.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:11.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:11.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:11.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:11.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:11.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:11.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:11.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.289][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.294][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.296][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.300][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.316][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:11.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:11.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.326][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.328][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.337][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.339][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:11.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:11.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.358][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:11.360][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:11.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.369][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.370][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.379][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.381][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.390][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.392][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.401][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:11.402][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:11.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.411][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:11.413][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:11.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:11.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:11.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.433][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.434][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:11.445][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:11.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.471][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:11.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:11.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.482][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:11.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:11.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.493][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:11.494][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:11.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:11.505][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:11.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.508][ef$get] fields variable is a list.
biodb.INFO [2025-04-22 06:50:11.518][biodb::testThat]
biodb.INFO [2025-04-22 06:50:11.520][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-22 06:50:11.521][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:11.522][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:11.543][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-22 06:50:11.553][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2025-04-22 06:50:11.558][self$getFolderPath] Create cache folder "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2025-04-22 06:50:11.560][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2025-04-22 06:50:11.561][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2025-04-22 06:50:11.563][private$doDownload] Downloading HMDB metabolite database at "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2025-04-22 06:50:11.565][cch$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2025-04-22 06:50:11.567][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-22 06:50:11.570][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-22 06:50:11.572][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-22 06:50:11.573][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2025-04-22 06:50:11.575][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker298ee21822301fmarker".
biodb.TRACE[2025-04-22 06:50:11.577][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2025-04-22 06:50:11.578][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-22 06:50:11.581][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-04-22 06:50:11.582][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2025-04-22 06:50:11.584][private$doExtractDownload] Extracting content of downloaded',
' HMDB metabolite database...
biodb.DEBUG[2025-04-22 06:50:11.586][self$getDownloadPath] Download path of hmdb.metabolites is "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2025-04-22 06:50:11.587][private$doExtractDownload] Unzipping /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /home/biocbuild/.cache/R/biodb/tmp...
biodb.DEBUG[2025-04-22 06:50:11.602][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2025-04-22 06:50:11.603][private$findXmlDatabaseFile] Found XML file /home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2025-04-22 06:50:11.604][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2025-04-22 06:50:11.606][private$doExtractDownload] Extract entries from XML file "/home/biocbuild/.cache/R/biodb/tmp/hmdb_two_full_entries.xml", into "/home/biocbuild/.cache/R/biodb/tmp".
biodb.TRACE[2025-04-22 06:50:11.616][self$addFilesToCache] Moving files to cache [2]: "/home/biocbuild/.cache/R/biodb/tmp/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2025-04-22 06:50:11.618][private$doAddFilesToCache] Destination files are [2]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-22 06:50:11.619][self$addFilesToCache] Done adding files.
biodb.DEBUG[2025-04-22 06:50:11.620][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2025-04-22 06:50:11.623][self$addFilesToCache] Moving files to cache [1]: "/home/biocbuild/.cache/R/biodb/tmp/marker298ee2631754damarker".
biodb.TRACE[2025-04-22 06:50:11.624][private$doAddFilesToCache] Destination files are [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2025-04-22 06:50:11.626][self$addFilesToCache] Done adding files.
biodb.TRACE[2025-04-22 06:50:11.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-22 06:50:11.630][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-22 06:50:11.632][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-22 06:50:11.634][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-22 06:50:11.669][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-22 06:50:11.670][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-22 06:50:11.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:11.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:11.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:11.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:11.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:11.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:11.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:11.699][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:11.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:11.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:11.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.710][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:11.712][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:11.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.716][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.722][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.723][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.728][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.734][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.735][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.740][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:11.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:11.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:11.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.757][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:11.759][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:11.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:11.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:11.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.769][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:11.771][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:11.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:11.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:11.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:11.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:11.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.792][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.794][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:11.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.804][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.805][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:11.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.815][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:11.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:11.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:11.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:11.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:11.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:11.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:11.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.840][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:11.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.862][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:11.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:11.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:11.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.881][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:11.882][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:11.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.887][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:11.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:11.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:11.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:11.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:11.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.923][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:11.925][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.930][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:11.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:11.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:11.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:11.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.956][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.962][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.968][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.975][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.981][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:11.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:11.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:11.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:11.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:12.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:12.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:12.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:12.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:12.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:12.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:12.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:12.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:12.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:12.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:12.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:12.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:12.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:12.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:12.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:12.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:12.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:12.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:12.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.091][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.098][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:12.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:12.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:12.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:12.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:12.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:12.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.168][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:12.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.174][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:12.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:12.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:12.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:12.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:12.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:12.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:12.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:12.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:12.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:12.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:12.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.230][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.236][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.242][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:12.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:12.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:12.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:12.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.264][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.287][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:12.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:12.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.331][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:12.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.336][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:12.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:12.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:12.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:12.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.348][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:12.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:12.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:12.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:12.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:12.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:12.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:12.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:12.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.388][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-22 06:50:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-22 06:50:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-22 06:50:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-22 06:50:12.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-22 06:50:12.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-22 06:50:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-22 06:50:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-22 06:50:12.416][biodb::testThat]
biodb.INFO [2025-04-22 06:50:12.418][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-22 06:50:12.419][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:12.421][biodb::testThat]
biodb.TRACE[2025-04-22 06:50:12.425][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.429][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.431][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-04-22 06:50:12.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.490][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-04-22 06:50:12.491][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-22 06:50:12.493][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-22 06:50:12.494][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-22 06:50:12.497][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.499][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.501][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:12.503][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.504][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:12.506][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:12.508][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:12.509][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:12.511][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:12.512][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-22 06:50:12.514][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-22 06:50:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.546][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-22 06:50:12.548][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-22 06:50:12.549][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-22 06:50:12.565][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.567][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.570][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.571][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-04-22 06:50:12.588][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.600][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.609][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-04-22 06:50:12.690][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-22 06:50:12.691][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-22 06:50:12.693][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-22 06:50:12.721][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.723][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.725][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:12.727][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.729][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:12.752][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:12.753][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:12.755][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:12.756][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:12.758][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-22 06:50:12.759][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-22 06:50:12.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.779][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:12.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:12.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.784][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-22 06:50:12.786][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-22 06:50:12.787][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-22 06:50:12.803][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.805][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.807][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.809][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-04-22 06:50:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.832][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.837][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.847][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-04-22 06:50:12.849][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-04-22 06:50:12.850][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-22 06:50:12.851][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-22 06:50:12.854][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.856][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.858][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:12.860][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.861][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:12.863][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:12.865][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:12.866][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:12.867][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:12.869][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-22 06:50:12.870][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-22 06:50:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.884][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.890][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:12.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.895][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-22 06:50:12.903][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-22 06:50:12.905][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-04-22 06:50:12.925][biodb::testThat]
biodb.INFO [2025-04-22 06:50:12.926][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-04-22 06:50:12.928][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:12.929][biodb::testThat]
biodb.TRACE[2025-04-22 06:50:12.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:12.975][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-22 06:50:12.977][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-22 06:50:12.978][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-22 06:50:12.981][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.983][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.985][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:12.987][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:12.988][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:12.990][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:12.992][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:12.993][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:12.994][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:12.996][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-22 06:50:12.997][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-22 06:50:13.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:13.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:13.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:13.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:13.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:13.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:13.023][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-22 06:50:13.024][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-04-22 06:50:13.044][biodb::testThat]
biodb.INFO [2025-04-22 06:50:13.046][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-04-22 06:50:13.047][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:13.048][biodb::testThat]
biodb.TRACE[2025-04-22 06:50:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-22 06:50:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-22 06:50:13.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-22 06:50:13.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-22 06:50:13.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.088][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-22 06:50:13.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-22 06:50:13.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-22 06:50:13.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-22 06:50:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-22 06:50:13.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-22 06:50:13.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-22 06:50:13.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-22 06:50:13.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-22 06:50:13.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-22 06:50:13.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:13.185][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-22 06:50:13.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-22 06:50:13.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:13.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-22 06:50:13.197][biodb::testThat]
biodb.INFO [2025-04-22 06:50:13.199][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-22 06:50:13.200][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:13.202][biodb::testThat]
biodb.INFO [2025-04-22 06:50:13.212][biodb::testThat]
biodb.INFO [2025-04-22 06:50:13.213][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-22 06:50:13.215][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:13.216][biodb::testThat]
biodb.INFO [2025-04-22 06:50:13.226][biodb::testThat]
biodb.INFO [2025-04-22 06:50:13.228][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-22 06:50:13.229][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:13.230][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:13.235][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-04-22 06:50:16.926][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-04-22 06:50:17.516][biodb::testThat]
biodb.INFO [2025-04-22 06:50:17.520][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-22 06:50:17.523][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:17.525][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:20.962][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-04-22 06:50:22.520][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:22.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:22.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.527][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:22.529][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:22.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.534][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:22.535][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:22.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.539][ef$get] fields variable is a list.
biodb.INFO [2025-04-22 06:50:22.541][biodb::testThat]
biodb.INFO [2025-04-22 06:50:22.543][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2025-04-22 06:50:22.544][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:22.571][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:22.574][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-04-22 06:50:22.654][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-22 06:50:22.657][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:22.659][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-22 06:50:22.684][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-04-22 06:50:22.686][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-22 06:50:22.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-22 06:50:22.689][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-22 06:50:22.691][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:22.693][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-22 06:50:22.694][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-22 06:50:22.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:22.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:22.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:22.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:22.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:22.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:22.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:22.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:22.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:22.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:22.806][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-22 06:50:22.807][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-04-22 06:50:22.834][biodb::testThat]
biodb.INFO [2025-04-22 06:50:22.836][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-04-22 06:50:22.838][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:22.839][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:22.850][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-04-22 06:50:22.852][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-04-22 06:50:22.853][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-22 06:50:22.855][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:22.857][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-22 06:50:22.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-04-22 06:50:22.862][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-22 06:50:22.863][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-22 06:50:22.864][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-22 06:50:22.866][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:22.868][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-22 06:50:22.870][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-22 06:50:22.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:22.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:22.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:22.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:22.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:22.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:22.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:22.888][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:22.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:22.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:22.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:22.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:22.943][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-22 06:50:22.944][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-04-22 06:50:22.945][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-04-22 06:50:22.963][biodb::testThat]
biodb.INFO [2025-04-22 06:50:22.964][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2025-04-22 06:50:22.966][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:22.967][biodb::testThat]
biodb.INFO [2025-04-22 06:50:22.997][biodb::testThat]
biodb.INFO [2025-04-22 06:50:22.998][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2025-04-22 06:50:23.000][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:23.001][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:23.004][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:23.006][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:23.008][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:23.010][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:23.011][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:23.013][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:23.014][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:23.015][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:23.017][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-04-22 06:50:23.027][biodb::testThat]
biodb.INFO [2025-04-22 06:50:23.028][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2025-04-22 06:50:23.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:23.031][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:23.034][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:23.036][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:23.038][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:23.040][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:23.041][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:23.043][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:23.044][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:23.046][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:23.047][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-04-22 06:50:23.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:23.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:23.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:23.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:23.065][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:23.067][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:23.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:23.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:23.071][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:23.073][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:23.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:23.075][ef$get] fields variable is a list.
biodb.INFO [2025-04-22 06:50:23.077][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-22 06:50:23.078][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-22 06:50:23.099][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-22 06:50:23.100][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-22 06:50:23.102][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.104][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.106][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-22 06:50:23.112][biodb::testContext]
biodb.INFO [2025-04-22 06:50:23.114][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-22 06:50:23.115][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-04-22 06:50:23.116][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-22 06:50:23.118][biodb::testContext]
biodb.INFO [2025-04-22 06:50:23.123][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-22 06:50:23.125][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-04-22 06:50:23.130][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:23.131][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-22 06:50:23.133][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-22 06:50:23.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.138][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-22 06:50:23.139][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-22 06:50:23.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.145][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-22 06:50:23.146][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-22 06:50:23.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.152][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-22 06:50:23.153][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-22 06:50:23.155][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-22 06:50:23.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.160][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-22 06:50:23.161][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-22 06:50:23.163][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-22 06:50:23.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.168][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-22 06:50:23.169][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-22 06:50:23.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.175][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-22 06:50:23.176][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-22 06:50:23.178][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-22 06:50:23.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.183][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-22 06:50:23.184][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-22 06:50:23.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.189][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-22 06:50:23.190][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-22 06:50:23.192][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-22 06:50:23.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.197][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-22 06:50:23.198][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-22 06:50:23.200][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-22 06:50:23.201][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-22 06:50:23.202][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-22 06:50:23.204][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-22 06:50:23.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.209][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-22 06:50:23.211][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-22 06:50:23.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.216][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-22 06:50:23.217][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-22 06:50:23.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.222][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-22 06:50:23.224][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-22 06:50:23.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.229][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-22 06:50:23.230][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-22 06:50:23.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.235][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-22 06:50:23.236][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-22 06:50:23.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.250][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-22 06:50:23.252][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-22 06:50:23.257][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-22 06:50:23.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.262][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-22 06:50:23.263][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-22 06:50:23.265][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-22 06:50:23.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.270][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-22 06:50:23.273][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.274][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-22 06:50:23.275][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.277][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:23.278][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.280][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.281][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.282][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.284][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-22 06:50:23.285][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:23.286][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.288][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-22 06:50:23.289][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:23.291][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.292][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.293][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:23.293][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-22 06:50:23.293][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-22 06:50:23.293][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-22 06:50:23.293][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-22 06:50:23.295][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:23.296][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:23.297][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:23.298][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:23.300][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:23.301][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:23.302][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.303][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.305][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:23.306][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:23.307][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.309][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.310][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-22 06:50:23.313][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.314][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-22 06:50:23.315][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.317][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:23.318][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.319][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.321][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.322][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.324][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-22 06:50:23.325][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:23.326][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.328][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-22 06:50:23.329][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:23.330][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.332][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.333][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:23.333][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-22 06:50:23.333][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-22 06:50:23.333][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-22 06:50:23.333][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-22 06:50:23.334][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:23.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:23.337][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:23.338][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:23.339][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:23.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:23.342][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.343][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.345][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:23.346][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:23.347][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.349][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.351][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-22 06:50:23.353][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.354][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-22 06:50:23.356][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.357][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:23.359][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.360][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.361][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.363][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.364][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-22 06:50:23.365][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:23.367][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.368][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-22 06:50:23.369][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:23.371][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.372][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.373][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.375][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:23.376][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:23.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:23.379][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:23.380][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:23.381][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:23.382][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.384][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.385][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:23.386][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:23.387][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.389][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.390][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-22 06:50:23.393][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.402][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-22 06:50:23.404][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.405][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:23.407][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.408][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.409][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.411][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.412][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-22 06:50:23.413][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:23.415][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.416][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-22 06:50:23.417][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:23.419][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.420][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.422][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.423][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:23.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:23.426][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:23.427][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:23.429][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:23.430][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:23.431][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.433][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.435][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:23.436][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:23.437][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.439][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:23.441][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:23.442][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.617][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-22 06:50:23.620][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-22 06:50:23.622][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-22 06:50:23.624][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-22 06:50:23.626][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-22 06:50:23.629][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-22 06:50:23.631][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-22 06:50:23.633][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-22 06:50:23.635][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-22 06:50:23.637][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-22 06:50:23.639][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-22 06:50:23.642][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-22 06:50:23.644][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-22 06:50:23.646][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-22 06:50:23.649][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-22 06:50:23.651][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-22 06:50:23.653][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-22 06:50:23.655][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-22 06:50:23.658][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-22 06:50:23.660][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-22 06:50:23.662][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-22 06:50:23.664][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-22 06:50:23.667][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-22 06:50:23.669][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-22 06:50:23.671][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-22 06:50:23.673][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-22 06:50:23.675][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-22 06:50:23.678][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-22 06:50:23.680][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-22 06:50:23.683][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-22 06:50:23.685][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-22 06:50:23.688][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-22 06:50:23.690][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-22 06:50:23.692][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-22 06:50:23.694][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-22 06:50:23.697][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-22 06:50:23.699][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-22 06:50:23.701][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-22 06:50:23.703][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-22 06:50:23.705][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-22 06:50:23.707][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-22 06:50:23.709][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-22 06:50:23.711][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-22 06:50:23.713][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-22 06:50:23.715][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-22 06:50:23.718][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-22 06:50:23.720][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-22 06:50:23.722][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-22 06:50:23.724][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-22 06:50:23.726][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-22 06:50:23.728][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-22 06:50:23.730][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-22 06:50:23.732][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-22 06:50:23.734][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-22 06:50:23.736][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-22 06:50:23.738][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-22 06:50:23.740][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-22 06:50:23.742][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-22 06:50:23.744][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-22 06:50:23.746][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-22 06:50:23.748][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-22 06:50:23.750][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-22 06:50:23.752][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-22 06:50:23.754][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-22 06:50:23.756][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-22 06:50:23.758][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-22 06:50:23.760][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-22 06:50:23.762][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-22 06:50:23.764][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-22 06:50:23.766][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-22 06:50:23.768][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-22 06:50:23.778][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-22 06:50:23.780][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-22 06:50:23.782][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-22 06:50:23.784][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-22 06:50:23.786][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-22 06:50:23.788][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-22 06:50:23.790][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-22 06:50:23.792][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-22 06:50:23.794][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-22 06:50:23.796][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-22 06:50:23.798][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-22 06:50:23.800][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-22 06:50:23.802][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-22 06:50:23.804][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-22 06:50:23.806][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:23.807][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.810][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:23.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:23.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:23.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:23.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:23.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:23.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:23.973][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-22 06:50:23.975][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:23.978][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.979][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.981][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.982][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:23.984][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.985][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-22 06:50:23.986][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.988][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:23.989][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-22 06:50:23.991][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:23.992][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:23.993][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-22 06:50:23.995][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-22 06:50:23.996][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-22 06:50:23.998][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:23.999][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:23.999][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-22 06:50:23.999][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-22 06:50:24.001][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-22 06:50:24.002][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:24.003][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:24.005][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:24.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:24.007][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:24.009][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:24.010][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-22 06:50:24.010][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-22 06:50:24.011][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:24.013][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:24.014][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:24.015][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:24.017][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-22 06:50:24.019][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-22 06:50:24.022][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-22 06:50:24.024][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-22 06:50:24.026][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-22 06:50:24.031][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:24.032][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-22 06:50:24.034][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:24.036][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:24.038][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:24.039][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:24.041][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-22 06:50:24.043][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-22 06:50:24.044][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-22 06:50:24.044][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-22 06:50:24.046][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:24.047][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:24.048][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-22 06:50:24.049][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-22 06:50:24.051][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:24.053][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:24.055][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:24.056][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:24.058][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:24.060][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:24.061][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-22 06:50:24.063][biodb::testThat]
biodb.INFO [2025-04-22 06:50:24.065][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-04-22 06:50:24.066][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:24.068][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:24.074][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:24.076][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:24.078][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:24.080][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:24.089][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:24.091][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:24.093][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:24.094][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:24.096][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:24.100][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-04-22 06:50:24.109][biodb::testThat]
biodb.INFO [2025-04-22 06:50:24.110][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-04-22 06:50:24.111][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:24.113][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:24.115][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-22 06:50:24.117][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-22 06:50:24.119][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:24.121][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-22 06:50:24.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-22 06:50:24.125][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-22 06:50:24.127][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-22 06:50:24.129][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-22 06:50:24.131][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-22 06:50:24.132][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-22 06:50:24.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:24.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:24.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:24.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:24.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:24.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:24.153][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.164][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.165][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.170][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.176][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.177][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.182][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.187][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.189][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.211][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.213][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.258][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.260][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.271][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.272][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.283][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:24.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:24.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:24.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:24.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:24.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:24.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:24.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.332][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.344][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:24.346][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:24.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:24.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:24.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.356][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:24.358][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:24.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:24.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.369][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:24.371][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:24.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.376][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:24.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:24.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.400][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.406][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:24.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.440][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:24.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:24.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:24.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:24.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:24.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:24.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:24.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.541][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:24.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:24.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.547][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:24.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:24.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:24.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:24.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:24.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:24.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:24.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.621][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.627][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.633][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:24.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:24.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.699][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:24.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:24.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:24.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.762][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:24.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:24.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:24.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:24.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.798][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:24.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:24.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.804][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:24.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:24.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.816][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:24.858][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-22 06:50:24.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:24.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:24.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:24.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:24.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-22 06:50:24.886][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-22 06:50:24.888][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-22 06:50:24.890][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-22 06:50:24.891][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-22 06:50:24.892][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:24.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:24.895][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:24.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:24.897][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-22 06:50:24.903][biodb::testContext]
biodb.INFO [2025-04-22 06:50:24.904][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-22 06:50:24.906][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-04-22 06:50:24.915][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-22 06:50:24.917][biodb::testContext]
biodb.INFO [2025-04-22 06:50:24.922][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-22 06:50:24.924][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-04-22 06:50:24.929][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:24.930][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-22 06:50:24.932][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-22 06:50:24.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.937][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-22 06:50:24.938][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-22 06:50:24.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.943][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-22 06:50:24.944][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-22 06:50:24.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.949][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-22 06:50:24.951][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-22 06:50:24.952][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-22 06:50:24.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.957][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-22 06:50:24.958][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-22 06:50:24.960][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-22 06:50:24.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.965][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-22 06:50:24.966][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-22 06:50:24.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.971][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-22 06:50:24.972][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-22 06:50:24.974][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-22 06:50:24.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.978][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-22 06:50:24.980][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-22 06:50:24.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.985][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-22 06:50:24.986][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-22 06:50:24.988][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-22 06:50:24.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:24.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:24.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:24.992][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-22 06:50:24.994][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-22 06:50:24.995][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-22 06:50:24.997][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-22 06:50:24.998][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-22 06:50:24.999][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-22 06:50:25.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.004][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-22 06:50:25.006][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-22 06:50:25.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.010][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-22 06:50:25.012][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-22 06:50:25.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.017][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-22 06:50:25.018][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-22 06:50:25.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.023][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-22 06:50:25.024][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-22 06:50:25.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.029][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-22 06:50:25.031][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-22 06:50:25.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.036][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-22 06:50:25.037][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-22 06:50:25.041][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-22 06:50:25.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.046][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-22 06:50:25.048][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-22 06:50:25.049][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-22 06:50:25.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.054][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-22 06:50:25.057][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.065][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-22 06:50:25.067][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.069][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:25.070][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.072][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.073][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.074][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.076][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-22 06:50:25.077][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:25.079][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.080][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-22 06:50:25.081][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:25.083][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.084][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.085][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:25.085][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-22 06:50:25.085][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-22 06:50:25.085][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-22 06:50:25.085][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-22 06:50:25.087][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:25.088][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.089][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.091][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:25.092][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.093][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.094][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.096][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.097][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:25.098][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:25.100][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.101][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.102][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-22 06:50:25.105][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.106][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-22 06:50:25.108][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.109][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:25.110][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.112][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.113][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.114][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.116][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-22 06:50:25.117][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:25.118][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.120][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-22 06:50:25.121][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:25.123][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.124][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.125][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:25.125][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-22 06:50:25.125][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-22 06:50:25.125][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-22 06:50:25.125][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-22 06:50:25.127][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:25.128][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.129][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.130][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:25.132][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.133][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.134][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.136][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.137][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:25.138][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:25.139][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.141][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.142][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-22 06:50:25.145][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.146][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-22 06:50:25.148][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.149][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:25.150][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.152][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.153][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.154][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.156][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-22 06:50:25.157][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:25.159][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.160][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-22 06:50:25.161][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:25.163][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.164][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.165][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.167][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:25.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.170][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:25.172][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.173][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.174][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.176][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.177][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:25.178][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:25.179][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.181][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.182][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-22 06:50:25.185][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.186][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-22 06:50:25.187][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.189][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:25.190][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.191][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.193][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.194][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.196][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-22 06:50:25.197][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:25.198][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.200][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-22 06:50:25.201][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:25.210][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.211][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.213][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.214][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-22 06:50:25.216][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.217][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.218][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:25.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.222][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.223][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.225][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:25.226][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:25.227][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.229][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.230][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:25.232][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.346][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-22 06:50:25.348][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-22 06:50:25.350][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-22 06:50:25.352][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-22 06:50:25.355][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-22 06:50:25.374][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-22 06:50:25.376][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-22 06:50:25.378][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-22 06:50:25.380][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-22 06:50:25.383][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-22 06:50:25.385][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-22 06:50:25.387][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-22 06:50:25.389][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-22 06:50:25.391][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-22 06:50:25.393][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-22 06:50:25.395][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-22 06:50:25.397][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-22 06:50:25.399][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-22 06:50:25.401][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-22 06:50:25.404][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-22 06:50:25.406][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-22 06:50:25.408][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-22 06:50:25.410][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-22 06:50:25.412][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-22 06:50:25.414][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-22 06:50:25.416][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-22 06:50:25.418][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-22 06:50:25.420][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-22 06:50:25.422][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-22 06:50:25.424][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-22 06:50:25.426][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-22 06:50:25.429][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-22 06:50:25.431][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-22 06:50:25.433][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-22 06:50:25.435][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-22 06:50:25.437][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-22 06:50:25.439][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-22 06:50:25.441][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-22 06:50:25.443][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-22 06:50:25.445][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-22 06:50:25.447][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-22 06:50:25.449][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-22 06:50:25.451][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-22 06:50:25.453][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-22 06:50:25.455][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-22 06:50:25.457][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-22 06:50:25.459][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-22 06:50:25.462][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-22 06:50:25.464][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-22 06:50:25.466][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-22 06:50:25.468][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-22 06:50:25.470][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-22 06:50:25.472][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-22 06:50:25.474][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-22 06:50:25.476][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-22 06:50:25.478][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-22 06:50:25.480][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-22 06:50:25.482][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-22 06:50:25.484][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-22 06:50:25.486][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-22 06:50:25.489][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-22 06:50:25.491][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-22 06:50:25.493][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-22 06:50:25.494][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-22 06:50:25.496][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-22 06:50:25.498][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-22 06:50:25.500][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-22 06:50:25.502][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-22 06:50:25.504][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-22 06:50:25.506][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-22 06:50:25.508][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-22 06:50:25.510][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-22 06:50:25.512][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-22 06:50:25.514][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-22 06:50:25.524][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-22 06:50:25.526][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-22 06:50:25.528][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-22 06:50:25.530][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-22 06:50:25.532][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-22 06:50:25.534][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-22 06:50:25.536][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-22 06:50:25.538][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-22 06:50:25.540][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-22 06:50:25.542][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-22 06:50:25.544][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-22 06:50:25.546][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-22 06:50:25.547][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.549][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-22 06:50:25.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:25.707][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-22 06:50:25.709][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:25.712][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.713][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.714][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.716][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-22 06:50:25.717][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.719][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-22 06:50:25.720][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.721][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.723][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-22 06:50:25.724][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-22 06:50:25.725][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.727][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-22 06:50:25.728][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-22 06:50:25.729][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-22 06:50:25.731][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-22 06:50:25.732][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-22 06:50:25.732][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-22 06:50:25.732][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-22 06:50:25.734][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-22 06:50:25.735][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.736][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.738][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-22 06:50:25.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-22 06:50:25.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-22 06:50:25.742][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-22 06:50:25.743][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-22 06:50:25.743][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-22 06:50:25.744][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:25.746][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:25.747][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-22 06:50:25.748][self$setPropertyValue]
biodb.DEBUG[2025-04-22 06:50:25.750][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-22 06:50:25.752][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-22 06:50:25.754][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-22 06:50:25.757][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-22 06:50:25.759][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-22 06:50:25.763][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:25.765][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-22 06:50:25.766][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:25.768][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:25.770][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:25.771][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:25.773][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-22 06:50:25.774][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-22 06:50:25.776][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-22 06:50:25.776][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-22 06:50:25.777][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-22 06:50:25.778][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-22 06:50:25.780][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-22 06:50:25.781][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-22 06:50:25.782][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-22 06:50:25.784][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:25.786][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:25.787][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:25.789][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-devel_2025-02-19/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-22 06:50:25.791][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-22 06:50:25.792][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-22 06:50:25.794][biodb::testThat]
biodb.INFO [2025-04-22 06:50:25.795][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2025-04-22 06:50:25.797][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-22 06:50:25.798][biodb::testThat]
biodb.DEBUG[2025-04-22 06:50:25.801][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-22 06:50:25.802][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-22 06:50:25.803][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-22 06:50:25.816][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:25.818][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:25.820][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:25.822][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:25.823][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:25.825][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:25.826][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:25.827][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:25.829][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:25.830][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-22 06:50:25.831][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-04-22 06:50:25.834][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-22 06:50:25.835][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-22 06:50:25.837][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:25.839][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-22 06:50:25.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-22 06:50:25.844][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-22 06:50:25.846][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-22 06:50:25.848][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-22 06:50:25.850][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-22 06:50:25.851][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-22 06:50:25.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:25.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:25.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:25.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:25.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:25.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:25.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:25.871][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:25.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:25.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:25.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:25.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.883][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:25.885][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:25.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:25.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:25.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.895][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:25.897][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:25.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.907][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:25.909][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:25.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:25.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:25.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:25.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:25.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:25.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.931][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:25.932][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:25.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:25.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.943][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:25.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:25.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:25.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:25.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.975][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:25.977][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:25.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:25.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:25.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.987][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:25.988][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:25.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:25.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:25.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:25.999][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:26.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:26.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:26.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:26.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.010][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:26.011][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:26.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:26.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.044][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.056][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.057][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:26.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:26.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.078][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:26.079][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.106][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.137][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.148][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:26.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:26.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:26.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:26.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:26.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.314][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.326][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.382][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.387][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.393][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:26.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:26.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.416][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:26.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.447][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:26.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.481][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.487][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:26.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:26.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.497][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:26.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:26.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:26.536][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-22 06:50:26.537][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.543][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:26.559][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-22 06:50:26.560][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-22 06:50:26.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:26.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:26.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:26.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:26.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:26.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:26.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:26.583][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-22 06:50:26.585][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-22 06:50:26.587][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:26.590][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-22 06:50:26.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-22 06:50:26.594][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-22 06:50:26.596][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-22 06:50:26.598][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-22 06:50:26.599][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-22 06:50:26.601][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-22 06:50:26.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:26.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:26.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:26.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:26.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:26.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:26.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:26.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.632][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.633][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.638][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.643][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.645][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.650][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.655][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.657][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.661][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.678][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.680][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.690][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.691][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:26.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.701][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:26.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.713][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.714][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.725][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.726][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.745][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:26.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:26.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:26.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:26.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:26.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:26.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:26.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:26.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:26.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.802][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.803][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:26.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:26.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:26.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.824][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:26.826][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-22 06:50:26.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.853][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.859][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-22 06:50:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.870][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.875][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-22 06:50:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-22 06:50:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-22 06:50:26.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-22 06:50:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-22 06:50:26.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-22 06:50:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.988][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:26.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:26.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:26.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:26.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-22 06:50:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-22 06:50:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:27.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:27.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-22 06:50:27.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-22 06:50:27.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:27.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:27.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.057][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:27.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:27.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.062][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-22 06:50:27.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:27.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-22 06:50:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:27.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:27.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:27.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:27.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:27.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:27.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:27.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:27.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-22 06:50:27.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.117][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:27.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.128][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:27.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-22 06:50:27.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:27.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:27.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:27.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-22 06:50:27.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-22 06:50:27.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-22 06:50:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-22 06:50:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:27.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:27.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:27.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:27.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-22 06:50:27.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-22 06:50:27.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.215][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:27.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.220][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:27.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:27.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.231][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:27.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-22 06:50:27.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:27.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:27.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:27.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:27.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:27.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-22 06:50:27.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-22 06:50:27.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:27.270][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-22 06:50:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.283][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.288][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:27.294][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-22 06:50:27.295][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:27.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:27.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:27.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:27.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:27.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:27.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:27.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:27.316][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-22 06:50:27.318][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-22 06:50:27.319][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-22 06:50:27.321][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:27.323][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:27.325][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:27.327][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:27.328][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:27.330][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:27.331][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:27.333][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:27.334][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:27.335][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-22 06:50:27.344][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-22 06:50:27.347][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.359][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.370][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:27.386][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-22 06:50:27.387][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-22 06:50:27.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:27.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:27.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:27.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:27.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:27.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:27.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:27.403][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:27.440][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-22 06:50:27.441][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-22 06:50:27.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:27.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:27.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:27.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:27.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:27.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:27.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-22 06:50:27.462][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-22 06:50:27.463][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-22 06:50:27.465][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-22 06:50:27.467][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:27.469][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:27.471][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-22 06:50:27.472][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-22 06:50:27.474][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-22 06:50:27.476][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-22 06:50:27.477][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-22 06:50:27.478][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-22 06:50:27.480][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-22 06:50:27.481][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-22 06:50:27.482][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-22 06:50:27.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.498][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.510][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.520][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:27.531][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-22 06:50:27.532][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-04-22 06:50:27.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:27.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:27.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:27.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:27.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:27.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:27.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-22 06:50:27.548][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.559][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.565][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.570][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.576][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-22 06:50:27.582][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-22 06:50:27.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-22 06:50:27.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-22 06:50:27.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-22 06:50:27.587][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-22 06:50:27.589][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-22 06:50:27.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-22 06:50:27.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:27.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:27.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:27.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:27.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:27.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-22 06:50:27.612][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-22 06:50:27.614][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-22 06:50:27.616][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-22 06:50:27.617][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-22 06:50:27.618][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-22 06:50:27.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-22 06:50:27.621][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-22 06:50:27.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-22 06:50:27.623][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-22 06:50:27.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
12.482 0.351 21.906