Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4831
palomino7	Windows Server 2022 Datacenter	x64	4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six"	4573
lconway	macOS 12.7.1 Monterey	x86_64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4599
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"	4553
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4570
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on lconway

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.14.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz

StartedAt: 2025-04-18 20:00:48 -0400 (Fri, 18 Apr 2025)

EndedAt: 2025-04-18 20:01:52 -0400 (Fri, 18 Apr 2025)

EllapsedTime: 63.2 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.14.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-04-18 20:01:32.831][biodb::testContext]
biodb.INFO [2025-04-18 20:01:32.835][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-18 20:01:32.836][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-04-18 20:01:32.838][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-18 20:01:32.839][biodb::testContext]
biodb.INFO [2025-04-18 20:01:32.841][biodb::testThat]
biodb.INFO [2025-04-18 20:01:32.843][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-04-18 20:01:32.844][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:32.845][biodb::testThat]
biodb.INFO [2025-04-18 20:01:32.988][biodb::testContext]
biodb.INFO [2025-04-18 20:01:32.990][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-18 20:01:32.991][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-04-18 20:01:32.992][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-18 20:01:32.993][biodb::testContext]
biodb.INFO [2025-04-18 20:01:33.004][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-18 20:01:33.007][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-18 20:01:33.017][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:33.018][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-18 20:01:33.020][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-18 20:01:33.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.026][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-18 20:01:33.061][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-18 20:01:33.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.067][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-18 20:01:33.068][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-18 20:01:33.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.072][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-18 20:01:33.073][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-18 20:01:33.074][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-18 20:01:33.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.079][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-18 20:01:33.080][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-18 20:01:33.081][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-18 20:01:33.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.084][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-18 20:01:33.086][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-18 20:01:33.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.090][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-18 20:01:33.091][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-18 20:01:33.093][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-18 20:01:33.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.097][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-18 20:01:33.098][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-18 20:01:33.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.102][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-18 20:01:33.104][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-18 20:01:33.105][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-18 20:01:33.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.110][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-18 20:01:33.111][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-18 20:01:33.113][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-18 20:01:33.114][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-18 20:01:33.116][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-18 20:01:33.117][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-18 20:01:33.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.121][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-18 20:01:33.122][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-18 20:01:33.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.127][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-18 20:01:33.128][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-18 20:01:33.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.133][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-18 20:01:33.134][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-18 20:01:33.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.138][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-18 20:01:33.139][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-18 20:01:33.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.145][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-18 20:01:33.146][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-18 20:01:33.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.150][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-18 20:01:33.152][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-18 20:01:33.208][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-18 20:01:33.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.212][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-18 20:01:33.213][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-18 20:01:33.214][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-18 20:01:33.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.221][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-18 20:01:33.267][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.288][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-18 20:01:33.290][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.291][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:33.293][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.294][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.295][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.296][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.297][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-18 20:01:33.298][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:33.300][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.301][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-18 20:01:33.302][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:33.303][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.305][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.306][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:33.306][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-18 20:01:33.306][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-18 20:01:33.306][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-18 20:01:33.306][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-18 20:01:33.307][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:33.308][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.309][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.310][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:33.311][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.312][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.313][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.314][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.315][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:33.316][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:33.326][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.327][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.328][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-18 20:01:33.330][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.332][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-18 20:01:33.334][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.335][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:33.336][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.337][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.338][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.339][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.340][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-18 20:01:33.341][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:33.342][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.343][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-18 20:01:33.344][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:33.345][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.346][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.347][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:33.347][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-18 20:01:33.347][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-18 20:01:33.347][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-18 20:01:33.347][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-18 20:01:33.348][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:33.349][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.351][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:33.352][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.353][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.354][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.355][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.356][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:33.357][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:33.358][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.359][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.360][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-18 20:01:33.362][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.363][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-18 20:01:33.364][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.365][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:33.367][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.368][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.369][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.370][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.371][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-18 20:01:33.372][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:33.373][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.374][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-18 20:01:33.376][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:33.377][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.378][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.379][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.381][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:33.382][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.383][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.384][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:33.385][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.387][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.388][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.389][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.390][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:33.391][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:33.392][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.393][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.394][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-18 20:01:33.396][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.397][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-18 20:01:33.398][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.399][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:33.400][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.401][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.402][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.404][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.405][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-18 20:01:33.407][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:33.408][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.409][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-18 20:01:33.410][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:33.411][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.412][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.414][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.415][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:33.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.419][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:33.420][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.421][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.422][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.423][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.424][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:33.425][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:33.426][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.428][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.432][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:33.434][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.531][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-18 20:01:33.543][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-18 20:01:33.545][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-18 20:01:33.547][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-18 20:01:33.549][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-18 20:01:33.551][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-18 20:01:33.552][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-18 20:01:33.554][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-18 20:01:33.556][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-18 20:01:33.558][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-18 20:01:33.559][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-18 20:01:33.561][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-18 20:01:33.563][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-18 20:01:33.564][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-18 20:01:33.566][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-18 20:01:33.568][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-18 20:01:33.569][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-18 20:01:33.571][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-18 20:01:33.573][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-18 20:01:33.574][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-18 20:01:33.575][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-18 20:01:33.577][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-18 20:01:33.579][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-18 20:01:33.580][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-18 20:01:33.582][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-18 20:01:33.584][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-18 20:01:33.586][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-18 20:01:33.587][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-18 20:01:33.589][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-18 20:01:33.591][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-18 20:01:33.593][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-18 20:01:33.594][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-18 20:01:33.596][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-18 20:01:33.598][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-18 20:01:33.600][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-18 20:01:33.601][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-18 20:01:33.603][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-18 20:01:33.605][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-18 20:01:33.607][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-18 20:01:33.608][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-18 20:01:33.610][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-18 20:01:33.612][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-18 20:01:33.613][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-18 20:01:33.615][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-18 20:01:33.617][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-18 20:01:33.618][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-18 20:01:33.620][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-18 20:01:33.622][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-18 20:01:33.624][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-18 20:01:33.626][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-18 20:01:33.628][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-18 20:01:33.630][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-18 20:01:33.632][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-18 20:01:33.633][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-18 20:01:33.635][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-18 20:01:33.637][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-18 20:01:33.639][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-18 20:01:33.640][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-18 20:01:33.642][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-18 20:01:33.644][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-18 20:01:33.646][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-18 20:01:33.648][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-18 20:01:33.650][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-18 20:01:33.652][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-18 20:01:33.653][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-18 20:01:33.655][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-18 20:01:33.657][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-18 20:01:33.658][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-18 20:01:33.660][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-18 20:01:33.661][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-18 20:01:33.662][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-18 20:01:33.664][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-18 20:01:33.666][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-18 20:01:33.668][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-18 20:01:33.670][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-18 20:01:33.672][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-18 20:01:33.674][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-18 20:01:33.675][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-18 20:01:33.677][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-18 20:01:33.679][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-18 20:01:33.680][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-18 20:01:33.682][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-18 20:01:33.683][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-18 20:01:33.692][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-18 20:01:33.695][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-18 20:01:33.698][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:33.699][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.702][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:33.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:33.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:33.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:33.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:33.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:33.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:33.874][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-18 20:01:33.886][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:33.889][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.891][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.892][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.893][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:33.895][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.896][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-18 20:01:33.897][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.898][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.899][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-18 20:01:33.900][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:33.902][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.903][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-18 20:01:33.904][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-18 20:01:33.905][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-18 20:01:33.907][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:33.908][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:33.908][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-18 20:01:33.908][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-18 20:01:33.909][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-18 20:01:33.910][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.911][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.912][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:33.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:33.914][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:33.915][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:33.916][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-18 20:01:33.916][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-18 20:01:33.918][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:33.919][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:33.921][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:33.923][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:33.931][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-18 20:01:33.933][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-18 20:01:33.935][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-18 20:01:33.937][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-18 20:01:33.939][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-18 20:01:33.969][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:33.971][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-18 20:01:33.976][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:33.981][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:33.986][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:33.987][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:33.989][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-18 20:01:33.990][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-18 20:01:33.992][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-18 20:01:33.992][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-18 20:01:33.993][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:33.995][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:33.996][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-18 20:01:33.997][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-18 20:01:33.998][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:34.029][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:34.030][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:34.031][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:34.033][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:34.034][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:34.035][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-18 20:01:34.045][biodb::testThat]
biodb.INFO [2025-04-18 20:01:34.046][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-18 20:01:34.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:34.049][biodb::testThat]
biodb.TRACE[2025-04-18 20:01:34.054][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-04-18 20:01:34.056][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-18 20:01:34.061][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-18 20:01:34.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:34.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:34.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:34.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:34.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:34.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:34.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:34.095][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.125][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.126][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.171][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.173][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.183][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.184][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.207][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.208][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.240][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.252][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.253][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.263][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.264][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.273][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:34.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:34.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:34.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:34.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.284][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:34.286][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:34.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:34.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:34.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.317][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.326][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:34.327][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:34.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:34.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:34.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.347][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:34.349][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:34.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.353][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.429][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.449][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:34.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:34.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:34.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.541][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:34.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:34.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:34.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:34.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:34.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:34.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:34.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:34.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:34.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.670][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.676][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.682][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:34.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:34.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:34.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.704][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:34.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:34.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:34.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.777][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:34.828][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-18 20:01:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-18 20:01:34.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-18 20:01:34.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-18 20:01:34.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-18 20:01:34.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-18 20:01:34.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-18 20:01:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-18 20:01:34.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-18 20:01:34.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.929][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.939][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.970][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:34.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.016][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.027][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.063][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.064][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.103][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.178][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:35.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.227][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:35.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:35.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:35.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:35.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.259][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:35.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.265][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:35.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.270][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:35.272][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:35.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:35.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:35.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.309][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:35.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:35.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:35.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.343][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.348][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.350][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.354][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.390][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.391][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.433][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.442][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.483][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.485][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.525][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.526][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:35.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:35.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:35.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:35.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:35.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:35.569][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:35.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:35.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:35.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:35.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.696][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.698][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.719][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:35.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:35.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.731][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.733][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:35.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.743][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.744][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:35.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:35.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.766][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.768][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:35.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.779][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.781][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:35.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.792][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.794][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:35.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.804][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.805][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:35.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.815][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:35.817][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:35.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.827][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:35.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:35.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:35.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:35.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.852][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:35.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.862][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:35.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:35.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.892][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:35.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.905][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:35.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.915][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.917][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:35.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:35.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:35.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:35.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:35.929][ef$get] fields variable is a list.
biodb.INFO [2025-04-18 20:01:35.939][biodb::testThat]
biodb.INFO [2025-04-18 20:01:35.941][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-18 20:01:35.942][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:35.943][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:35.960][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-18 20:01:35.969][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-18 20:01:35.975][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:35.977][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-18 20:01:35.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-18 20:01:35.982][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-18 20:01:35.984][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-18 20:01:35.986][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-18 20:01:36.017][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-18 20:01:36.019][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-18 20:01:36.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:36.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:36.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:36.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:36.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:36.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:36.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:36.040][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.051][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.053][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.062][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.064][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.072][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.073][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.101][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.102][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.111][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.112][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.116][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.134][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.135][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.146][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.147][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.157][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:36.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:36.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:36.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:36.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:36.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:36.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.205][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.216][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.218][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.228][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:36.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:36.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:36.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.238][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:36.239][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:36.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.242][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:36.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:36.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.275][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.281][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.295][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:36.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:36.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:36.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:36.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:36.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:36.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:36.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:36.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:36.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:36.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:36.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:36.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.530][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:36.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:36.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.586][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:36.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:36.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:36.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:36.639][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-18 20:01:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-18 20:01:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-18 20:01:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-18 20:01:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-18 20:01:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-18 20:01:36.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-18 20:01:36.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-18 20:01:36.667][biodb::testThat]
biodb.INFO [2025-04-18 20:01:36.668][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-18 20:01:36.670][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:36.671][biodb::testThat]
biodb.TRACE[2025-04-18 20:01:36.676][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.681][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:36.682][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-04-18 20:01:36.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:36.748][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-04-18 20:01:36.750][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-18 20:01:36.752][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-18 20:01:36.753][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-18 20:01:36.755][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:36.758][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:36.760][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:36.762][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:36.763][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:36.765][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:36.767][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:36.768][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:36.769][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:36.771][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-18 20:01:36.772][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-18 20:01:36.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:36.796][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-18 20:01:36.798][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-18 20:01:36.799][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-18 20:01:36.817][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.819][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.822][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:36.823][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-04-18 20:01:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:36.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:36.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:36.873][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-04-18 20:01:36.947][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-18 20:01:36.949][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-18 20:01:36.950][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-04-18 20:01:36.971][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:36.974][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:36.976][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:36.979][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:36.980][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:37.007][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:37.008][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:37.010][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:37.011][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:37.012][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-18 20:01:37.013][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-18 20:01:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:37.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:37.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.026][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:37.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:37.036][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-18 20:01:37.037][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-18 20:01:37.039][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-04-18 20:01:37.057][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.059][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.063][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:37.064][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-04-18 20:01:37.084][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.091][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:37.108][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-04-18 20:01:37.110][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-04-18 20:01:37.112][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-18 20:01:37.113][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-04-18 20:01:37.116][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:37.118][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:37.120][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:37.122][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:37.123][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:37.124][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:37.126][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:37.127][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:37.128][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:37.130][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-18 20:01:37.131][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-18 20:01:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.148][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:37.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:37.152][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-18 20:01:37.153][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-18 20:01:37.155][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-04-18 20:01:37.177][biodb::testThat]
biodb.INFO [2025-04-18 20:01:37.179][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-18 20:01:37.180][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:37.182][biodb::testThat]
biodb.TRACE[2025-04-18 20:01:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:37.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:37.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:37.236][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-04-18 20:01:37.237][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-18 20:01:37.238][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-04-18 20:01:37.240][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:37.242][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:37.244][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:37.246][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:37.247][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:37.249][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:37.250][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:37.251][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:37.252][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:37.253][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-18 20:01:37.254][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-18 20:01:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:37.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:37.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:37.278][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-18 20:01:37.280][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-04-18 20:01:37.303][biodb::testThat]
biodb.INFO [2025-04-18 20:01:37.305][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-18 20:01:37.306][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:37.308][biodb::testThat]
biodb.TRACE[2025-04-18 20:01:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-18 20:01:37.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-18 20:01:37.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-18 20:01:37.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-18 20:01:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.349][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-18 20:01:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-18 20:01:37.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-18 20:01:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-18 20:01:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-18 20:01:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-18 20:01:37.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-18 20:01:37.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-18 20:01:37.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-18 20:01:37.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-18 20:01:37.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:37.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-18 20:01:37.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-18 20:01:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-18 20:01:37.454][biodb::testThat]
biodb.INFO [2025-04-18 20:01:37.455][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-18 20:01:37.457][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:37.458][biodb::testThat]
biodb.INFO [2025-04-18 20:01:37.470][biodb::testThat]
biodb.INFO [2025-04-18 20:01:37.472][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-18 20:01:37.474][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:37.475][biodb::testThat]
biodb.INFO [2025-04-18 20:01:37.487][biodb::testThat]
biodb.INFO [2025-04-18 20:01:37.488][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-18 20:01:37.490][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:37.491][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:37.497][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-04-18 20:01:39.640][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-04-18 20:01:39.697][biodb::testThat]
biodb.INFO [2025-04-18 20:01:39.698][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-18 20:01:39.700][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:39.701][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:39.823][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-04-18 20:01:39.866][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:39.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:39.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:39.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:39.871][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:39.872][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:39.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:39.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:39.875][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:39.877][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:39.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:39.879][ef$get] fields variable is a list.
biodb.INFO [2025-04-18 20:01:39.881][biodb::testThat]
biodb.INFO [2025-04-18 20:01:39.882][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-04-18 20:01:39.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:39.885][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:39.887][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-04-18 20:01:39.955][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-18 20:01:39.958][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:39.960][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-18 20:01:39.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-04-18 20:01:39.982][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-18 20:01:39.983][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-18 20:01:39.985][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-18 20:01:39.986][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:39.988][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-18 20:01:39.990][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-18 20:01:39.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:39.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:39.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:40.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:40.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.009][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:40.079][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-18 20:01:40.080][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-04-18 20:01:40.102][biodb::testThat]
biodb.INFO [2025-04-18 20:01:40.103][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-04-18 20:01:40.105][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:40.106][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:40.115][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-04-18 20:01:40.116][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-04-18 20:01:40.118][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-18 20:01:40.120][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:40.122][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-18 20:01:40.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-04-18 20:01:40.126][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-18 20:01:40.127][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-18 20:01:40.128][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-18 20:01:40.130][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:40.131][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-18 20:01:40.133][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-18 20:01:40.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:40.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.153][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:40.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:40.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:40.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:40.188][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-04-18 20:01:40.189][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-04-18 20:01:40.190][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-04-18 20:01:40.217][biodb::testThat]
biodb.INFO [2025-04-18 20:01:40.218][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-04-18 20:01:40.219][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:40.220][biodb::testThat]
biodb.INFO [2025-04-18 20:01:40.249][biodb::testThat]
biodb.INFO [2025-04-18 20:01:40.251][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-04-18 20:01:40.252][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:40.253][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:40.257][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:40.258][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:40.260][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:40.261][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:40.262][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:40.264][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:40.265][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:40.266][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:40.267][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-04-18 20:01:40.279][biodb::testThat]
biodb.INFO [2025-04-18 20:01:40.280][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-04-18 20:01:40.281][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:40.282][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:40.286][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:40.287][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:40.289][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:40.291][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:40.292][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:40.294][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:40.295][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:40.296][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:40.297][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-04-18 20:01:40.311][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:40.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:40.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.315][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:40.316][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:40.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:40.320][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:40.321][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:40.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:40.323][ef$get] fields variable is a list.
biodb.INFO [2025-04-18 20:01:40.324][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-18 20:01:40.325][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-18 20:01:40.335][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-18 20:01:40.336][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-18 20:01:40.338][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.340][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.342][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-18 20:01:40.348][biodb::testContext]
biodb.INFO [2025-04-18 20:01:40.350][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-18 20:01:40.351][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-04-18 20:01:40.360][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-18 20:01:40.363][biodb::testContext]
biodb.INFO [2025-04-18 20:01:40.369][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-18 20:01:40.372][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-18 20:01:40.376][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:40.378][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-18 20:01:40.379][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-18 20:01:40.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.383][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-18 20:01:40.385][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-18 20:01:40.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.390][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-18 20:01:40.391][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-18 20:01:40.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.396][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-18 20:01:40.397][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-18 20:01:40.398][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-18 20:01:40.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.402][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-18 20:01:40.403][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-18 20:01:40.405][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-18 20:01:40.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.409][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-18 20:01:40.410][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-18 20:01:40.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.415][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-18 20:01:40.417][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-18 20:01:40.418][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-18 20:01:40.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.422][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-18 20:01:40.423][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-18 20:01:40.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.428][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-18 20:01:40.429][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-18 20:01:40.431][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-18 20:01:40.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.435][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-18 20:01:40.436][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-18 20:01:40.437][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-18 20:01:40.439][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-18 20:01:40.440][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-18 20:01:40.441][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-18 20:01:40.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.446][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-18 20:01:40.448][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-18 20:01:40.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.452][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-18 20:01:40.454][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-18 20:01:40.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.459][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-18 20:01:40.460][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-18 20:01:40.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.464][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-18 20:01:40.465][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-18 20:01:40.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.470][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-18 20:01:40.471][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-18 20:01:40.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.475][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-18 20:01:40.477][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-18 20:01:40.503][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-18 20:01:40.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.507][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-18 20:01:40.508][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-18 20:01:40.509][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-18 20:01:40.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.513][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-18 20:01:40.515][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.516][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-18 20:01:40.517][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.518][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:40.519][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.526][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.528][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.529][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.530][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-18 20:01:40.531][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:40.533][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.534][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-18 20:01:40.535][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:40.536][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.537][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.538][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:40.538][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-18 20:01:40.538][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-18 20:01:40.538][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-18 20:01:40.538][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-18 20:01:40.539][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:40.540][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:40.540][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:40.542][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:40.543][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:40.544][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:40.545][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.547][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.548][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:40.549][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:40.550][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.550][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.552][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-18 20:01:40.554][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.556][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-18 20:01:40.557][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.558][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:40.560][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.561][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.562][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.563][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.565][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-18 20:01:40.566][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:40.567][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.569][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-18 20:01:40.570][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:40.571][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.573][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.574][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:40.574][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-18 20:01:40.574][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-18 20:01:40.574][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-18 20:01:40.574][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-18 20:01:40.575][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:40.576][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:40.577][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:40.578][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:40.579][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:40.579][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:40.580][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.581][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.582][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:40.583][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:40.584][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.585][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.586][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-18 20:01:40.589][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.590][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-18 20:01:40.591][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.593][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:40.594][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.595][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.596][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.597][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.598][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-18 20:01:40.599][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:40.600][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.602][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-18 20:01:40.603][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:40.604][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.606][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.607][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.608][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:40.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:40.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:40.611][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:40.612][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:40.613][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:40.614][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.615][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.617][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:40.618][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:40.619][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.620][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.621][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-18 20:01:40.624][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.625][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-18 20:01:40.626][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.628][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:40.629][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.630][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.632][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.633][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.634][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-18 20:01:40.635][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:40.636][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.638][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-18 20:01:40.639][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:40.640][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.641][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:40.642][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.643][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:40.644][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:40.645][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:40.647][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:40.648][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:40.649][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:40.655][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:40.657][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.658][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:40.659][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:40.661][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:40.662][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:40.663][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:40.665][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.757][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-18 20:01:40.759][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-18 20:01:40.760][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-18 20:01:40.762][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-18 20:01:40.764][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-18 20:01:40.765][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-18 20:01:40.767][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-18 20:01:40.769][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-18 20:01:40.771][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-18 20:01:40.773][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-18 20:01:40.775][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-18 20:01:40.776][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-18 20:01:40.778][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-18 20:01:40.787][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-18 20:01:40.790][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-18 20:01:40.792][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-18 20:01:40.794][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-18 20:01:40.796][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-18 20:01:40.798][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-18 20:01:40.800][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-18 20:01:40.802][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-18 20:01:40.804][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-18 20:01:40.805][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-18 20:01:40.807][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-18 20:01:40.809][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-18 20:01:40.811][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-18 20:01:40.813][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-18 20:01:40.815][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-18 20:01:40.817][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-18 20:01:40.818][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-18 20:01:40.820][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-18 20:01:40.822][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-18 20:01:40.824][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-18 20:01:40.826][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-18 20:01:40.828][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-18 20:01:40.829][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-18 20:01:40.831][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-18 20:01:40.833][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-18 20:01:40.835][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-18 20:01:40.837][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-18 20:01:40.839][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-18 20:01:40.841][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-18 20:01:40.843][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-18 20:01:40.844][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-18 20:01:40.846][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-18 20:01:40.847][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-18 20:01:40.849][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-18 20:01:40.851][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-18 20:01:40.853][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-18 20:01:40.855][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-18 20:01:40.856][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-18 20:01:40.858][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-18 20:01:40.860][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-18 20:01:40.861][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-18 20:01:40.863][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-18 20:01:40.865][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-18 20:01:40.867][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-18 20:01:40.869][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-18 20:01:40.871][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-18 20:01:40.872][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-18 20:01:40.874][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-18 20:01:40.876][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-18 20:01:40.878][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-18 20:01:40.880][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-18 20:01:40.882][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-18 20:01:40.883][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-18 20:01:40.885][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-18 20:01:40.887][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-18 20:01:40.888][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-18 20:01:40.890][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-18 20:01:40.892][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-18 20:01:40.894][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-18 20:01:40.895][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-18 20:01:40.897][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-18 20:01:40.898][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-18 20:01:40.900][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-18 20:01:40.901][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-18 20:01:40.903][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-18 20:01:40.905][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-18 20:01:40.906][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-18 20:01:40.908][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-18 20:01:40.910][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-18 20:01:40.912][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-18 20:01:40.914][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-18 20:01:40.916][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-18 20:01:40.917][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:40.918][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.927][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:40.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:40.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:40.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:40.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:40.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:40.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:40.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.067][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-18 20:01:41.069][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:41.071][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:41.072][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-18 20:01:41.074][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:41.075][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:41.076][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:41.077][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-18 20:01:41.078][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:41.079][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:41.080][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-18 20:01:41.081][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:41.082][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:41.083][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-18 20:01:41.084][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-18 20:01:41.085][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-18 20:01:41.087][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:41.088][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:41.088][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-18 20:01:41.088][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-18 20:01:41.089][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-18 20:01:41.090][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:41.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:41.092][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:41.093][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:41.094][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:41.096][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:41.096][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-18 20:01:41.096][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-18 20:01:41.098][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:41.099][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:41.100][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:41.101][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:41.103][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-18 20:01:41.105][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-18 20:01:41.107][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-18 20:01:41.109][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-18 20:01:41.111][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-18 20:01:41.115][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:41.116][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-18 20:01:41.118][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:41.120][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:41.121][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:41.122][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:41.124][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-18 20:01:41.125][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-18 20:01:41.126][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-18 20:01:41.126][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-18 20:01:41.127][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:41.128][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:41.129][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-18 20:01:41.130][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-18 20:01:41.131][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:41.133][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:41.135][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:41.136][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:41.138][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:41.139][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:41.140][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-18 20:01:41.142][biodb::testThat]
biodb.INFO [2025-04-18 20:01:41.143][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-04-18 20:01:41.144][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:41.145][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:41.150][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:41.153][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:41.155][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:41.156][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:41.157][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:41.159][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:41.161][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:41.163][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:41.164][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:41.168][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-04-18 20:01:41.177][biodb::testThat]
biodb.INFO [2025-04-18 20:01:41.179][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-04-18 20:01:41.180][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:41.182][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:41.184][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-18 20:01:41.185][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-18 20:01:41.188][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:41.189][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-18 20:01:41.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-18 20:01:41.202][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-18 20:01:41.205][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-18 20:01:41.207][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-18 20:01:41.209][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-18 20:01:41.211][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-18 20:01:41.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:41.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:41.231][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.242][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.244][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.252][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.254][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.257][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.264][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.265][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.284][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.285][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.296][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.300][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.307][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.317][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.318][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.326][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.336][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:41.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:41.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:41.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:41.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.363][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.365][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.384][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.394][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:41.395][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:41.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:41.407][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:41.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.416][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:41.417][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:41.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.420][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:41.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:41.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.449][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:41.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.454][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:41.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:41.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:41.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:41.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:41.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:41.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:41.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:41.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:41.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.683][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:41.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.703][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.724][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:41.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.780][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.790][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:41.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:41.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:41.824][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-18 20:01:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-18 20:01:41.847][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-18 20:01:41.848][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-18 20:01:41.850][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-18 20:01:41.851][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-18 20:01:41.852][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:41.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:41.855][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:41.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:41.857][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-18 20:01:41.863][biodb::testContext]
biodb.INFO [2025-04-18 20:01:41.865][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-18 20:01:41.867][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-04-18 20:01:41.868][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-18 20:01:41.869][biodb::testContext]
biodb.INFO [2025-04-18 20:01:41.876][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-18 20:01:41.878][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-18 20:01:41.884][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:41.886][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-18 20:01:41.887][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-18 20:01:41.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.891][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-18 20:01:41.892][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-18 20:01:41.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.897][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-18 20:01:41.899][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-18 20:01:41.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.903][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-18 20:01:41.912][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-18 20:01:41.914][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-18 20:01:41.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.920][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-18 20:01:41.921][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-18 20:01:41.923][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-18 20:01:41.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.927][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-18 20:01:41.929][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-18 20:01:41.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.933][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-18 20:01:41.934][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-18 20:01:41.936][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-18 20:01:41.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.940][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-18 20:01:41.941][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-18 20:01:41.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.945][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-18 20:01:41.947][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-18 20:01:41.948][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-18 20:01:41.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.952][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-18 20:01:41.954][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-18 20:01:41.955][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-18 20:01:41.957][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-18 20:01:41.958][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-18 20:01:41.960][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-18 20:01:41.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.964][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-18 20:01:41.965][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-18 20:01:41.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.969][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-18 20:01:41.971][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-18 20:01:41.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.975][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-18 20:01:41.977][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-18 20:01:41.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.982][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-18 20:01:41.983][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-18 20:01:41.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.987][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-18 20:01:41.988][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-18 20:01:41.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:41.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:41.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:41.993][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-18 20:01:41.994][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-18 20:01:42.022][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-18 20:01:42.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.027][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-18 20:01:42.029][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-18 20:01:42.030][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-18 20:01:42.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.034][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-18 20:01:42.037][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.038][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-18 20:01:42.039][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.041][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:42.042][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.043][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.044][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.046][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.047][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-18 20:01:42.048][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:42.050][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.051][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-18 20:01:42.052][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:42.054][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.054][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.056][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:42.056][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-18 20:01:42.056][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-18 20:01:42.056][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-18 20:01:42.056][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-18 20:01:42.057][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:42.059][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.060][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.061][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:42.062][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.064][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.065][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.066][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:42.073][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:42.075][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.077][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.078][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-18 20:01:42.080][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.082][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-18 20:01:42.083][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.084][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:42.085][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.086][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.087][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.089][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.090][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-18 20:01:42.091][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:42.092][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.094][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-18 20:01:42.095][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:42.096][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.097][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.098][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:42.098][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-18 20:01:42.098][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-18 20:01:42.098][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-18 20:01:42.098][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-18 20:01:42.099][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:42.101][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.101][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.103][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:42.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.105][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.106][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.106][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.108][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:42.109][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:42.110][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.111][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.113][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-18 20:01:42.115][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.116][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-18 20:01:42.117][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.118][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:42.120][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.121][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.122][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.123][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.124][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-18 20:01:42.125][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:42.127][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.128][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-18 20:01:42.129][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:42.131][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.132][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.133][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.135][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:42.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.139][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:42.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.143][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.144][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.145][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:42.146][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:42.147][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.148][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.150][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-18 20:01:42.152][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.154][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-18 20:01:42.155][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.156][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:42.157][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.158][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.160][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.161][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.162][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-18 20:01:42.163][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:42.164][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.165][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-18 20:01:42.166][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:42.167][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.169][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.169][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.170][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-18 20:01:42.171][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.172][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.174][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:42.175][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.176][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.177][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.178][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.180][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:42.181][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:42.182][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.184][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.186][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:42.187][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.301][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-18 20:01:42.302][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-18 20:01:42.304][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-18 20:01:42.306][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-18 20:01:42.307][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-18 20:01:42.309][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-18 20:01:42.310][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-18 20:01:42.312][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-18 20:01:42.314][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-18 20:01:42.315][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-18 20:01:42.318][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-18 20:01:42.320][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-18 20:01:42.322][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-18 20:01:42.323][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-18 20:01:42.325][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-18 20:01:42.326][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-18 20:01:42.328][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-18 20:01:42.330][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-18 20:01:42.331][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-18 20:01:42.333][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-18 20:01:42.334][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-18 20:01:42.342][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-18 20:01:42.345][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-18 20:01:42.347][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-18 20:01:42.349][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-18 20:01:42.351][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-18 20:01:42.353][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-18 20:01:42.355][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-18 20:01:42.357][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-18 20:01:42.359][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-18 20:01:42.360][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-18 20:01:42.362][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-18 20:01:42.364][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-18 20:01:42.366][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-18 20:01:42.368][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-18 20:01:42.370][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-18 20:01:42.372][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-18 20:01:42.373][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-18 20:01:42.375][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-18 20:01:42.377][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-18 20:01:42.378][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-18 20:01:42.380][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-18 20:01:42.381][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-18 20:01:42.383][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-18 20:01:42.385][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-18 20:01:42.386][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-18 20:01:42.388][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-18 20:01:42.390][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-18 20:01:42.392][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-18 20:01:42.393][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-18 20:01:42.395][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-18 20:01:42.397][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-18 20:01:42.399][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-18 20:01:42.400][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-18 20:01:42.402][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-18 20:01:42.403][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-18 20:01:42.405][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-18 20:01:42.406][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-18 20:01:42.408][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-18 20:01:42.409][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-18 20:01:42.411][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-18 20:01:42.413][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-18 20:01:42.415][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-18 20:01:42.416][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-18 20:01:42.418][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-18 20:01:42.420][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-18 20:01:42.422][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-18 20:01:42.424][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-18 20:01:42.426][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-18 20:01:42.427][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-18 20:01:42.429][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-18 20:01:42.431][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-18 20:01:42.432][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-18 20:01:42.434][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-18 20:01:42.436][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-18 20:01:42.438][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-18 20:01:42.439][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-18 20:01:42.441][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-18 20:01:42.444][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-18 20:01:42.446][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-18 20:01:42.448][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-18 20:01:42.450][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-18 20:01:42.452][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-18 20:01:42.454][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-18 20:01:42.456][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-18 20:01:42.457][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-18 20:01:42.459][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.461][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-18 20:01:42.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:42.614][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-04-18 20:01:42.616][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:42.618][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.620][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.620][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.622][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-18 20:01:42.623][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.624][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-04-18 20:01:42.626][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.627][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.628][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-18 20:01:42.629][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-18 20:01:42.631][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.632][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-04-18 20:01:42.633][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-04-18 20:01:42.635][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-04-18 20:01:42.636][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-18 20:01:42.638][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-18 20:01:42.638][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-04-18 20:01:42.638][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-04-18 20:01:42.639][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-18 20:01:42.640][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.641][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.642][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-18 20:01:42.643][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-18 20:01:42.645][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-18 20:01:42.646][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-18 20:01:42.647][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-18 20:01:42.647][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-04-18 20:01:42.648][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:42.649][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:42.650][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-18 20:01:42.651][self$setPropertyValue]
biodb.DEBUG[2025-04-18 20:01:42.652][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-04-18 20:01:42.654][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-18 20:01:42.656][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-18 20:01:42.659][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-18 20:01:42.661][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-18 20:01:42.666][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:42.668][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-04-18 20:01:42.669][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:42.672][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:42.673][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:42.675][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:42.677][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-04-18 20:01:42.678][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-04-18 20:01:42.680][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-04-18 20:01:42.680][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-04-18 20:01:42.681][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-18 20:01:42.682][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-18 20:01:42.684][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-04-18 20:01:42.685][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-04-18 20:01:42.686][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-04-18 20:01:42.688][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:42.690][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:42.691][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:42.692][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-04-18 20:01:42.694][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-18 20:01:42.695][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-04-18 20:01:42.697][biodb::testThat]
biodb.INFO [2025-04-18 20:01:42.697][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-04-18 20:01:42.699][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-18 20:01:42.700][biodb::testThat]
biodb.DEBUG[2025-04-18 20:01:42.703][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-18 20:01:42.704][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-18 20:01:42.705][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-04-18 20:01:42.710][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:42.712][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:42.714][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:42.716][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:42.717][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:42.719][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:42.721][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:42.722][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:42.723][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:42.724][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-18 20:01:42.725][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-04-18 20:01:42.727][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-04-18 20:01:42.729][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-18 20:01:42.731][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:42.733][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-18 20:01:42.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-04-18 20:01:42.738][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-18 20:01:42.740][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-04-18 20:01:42.742][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-18 20:01:42.744][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-18 20:01:42.752][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-18 20:01:42.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:42.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:42.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:42.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:42.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:42.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:42.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:42.774][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:42.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:42.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.786][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:42.787][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:42.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.796][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:42.798][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:42.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:42.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.808][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:42.809][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:42.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:42.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:42.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:42.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.831][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:42.832][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:42.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:42.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:42.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.848][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:42.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:42.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.866][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:42.868][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:42.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.878][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:42.880][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:42.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.890][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:42.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:42.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:42.913][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:42.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:42.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:42.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:42.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:42.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.946][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:42.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:42.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.958][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:42.960][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:42.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:42.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:42.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:42.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.982][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:42.984][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:42.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:42.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:42.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:42.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.023][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.151][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:43.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:43.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:43.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:43.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:43.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:43.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:43.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:43.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:43.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:43.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.312][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:43.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.333][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:43.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.376][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.381][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:43.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:43.428][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-04-18 20:01:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.440][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.446][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:43.451][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-18 20:01:43.453][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-18 20:01:43.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:43.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:43.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:43.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:43.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:43.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:43.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:43.469][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-04-18 20:01:43.470][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-18 20:01:43.471][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:43.473][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-04-18 20:01:43.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-04-18 20:01:43.478][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-18 20:01:43.480][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-04-18 20:01:43.481][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-04-18 20:01:43.483][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-04-18 20:01:43.485][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-04-18 20:01:43.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:43.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:43.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:43.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:43.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:43.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:43.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:43.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.528][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.529][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.534][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.538][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.539][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.542][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.547][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.549][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.553][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.570][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.571][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.587][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.604][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.605][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.614][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.616][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:43.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:43.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:43.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.636][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:43.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:43.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:43.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.647][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.667][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.676][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.687][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.688][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.692][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:43.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:43.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:43.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:43.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.709][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:43.710][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.715][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-04-18 20:01:43.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:43.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:43.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.735][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.740][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-18 20:01:43.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.756][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-04-18 20:01:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-18 20:01:43.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-04-18 20:01:43.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-18 20:01:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-18 20:01:43.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-04-18 20:01:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.860][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.865][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.871][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:43.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:43.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:43.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:43.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-18 20:01:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-18 20:01:43.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:43.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:43.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-18 20:01:43.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-18 20:01:43.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:43.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.922][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.932][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-18 20:01:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-18 20:01:43.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-18 20:01:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:43.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:43.998][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.003][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:44.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-04-18 20:01:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:44.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:44.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-18 20:01:44.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-18 20:01:44.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:44.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:44.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:44.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-18 20:01:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-04-18 20:01:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-18 20:01:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:44.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:44.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-18 20:01:44.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-18 20:01:44.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.089][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:44.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:44.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:44.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:44.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-04-18 20:01:44.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:44.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:44.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:44.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:44.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-18 20:01:44.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-18 20:01:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:44.151][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-04-18 20:01:44.153][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.164][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:44.175][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-18 20:01:44.176][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:44.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:44.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:44.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:44.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:44.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:44.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:44.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:44.197][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-18 20:01:44.199][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-18 20:01:44.200][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-04-18 20:01:44.202][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:44.204][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:44.206][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:44.208][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:44.210][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:44.211][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:44.213][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:44.214][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:44.215][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:44.216][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-18 20:01:44.217][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-18 20:01:44.219][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.230][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.235][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.239][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.245][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.250][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:44.263][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-18 20:01:44.265][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-18 20:01:44.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:44.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:44.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:44.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:44.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:44.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:44.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:44.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.298][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:44.318][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-18 20:01:44.319][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-18 20:01:44.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:44.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:44.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:44.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:44.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:44.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:44.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-18 20:01:44.341][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-04-18 20:01:44.342][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-18 20:01:44.344][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-04-18 20:01:44.346][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:44.348][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:44.350][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-04-18 20:01:44.352][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-04-18 20:01:44.353][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-04-18 20:01:44.355][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-04-18 20:01:44.357][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-04-18 20:01:44.358][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-04-18 20:01:44.359][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-04-18 20:01:44.361][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-04-18 20:01:44.362][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-04-18 20:01:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.383][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:44.406][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-04-18 20:01:44.407][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-04-18 20:01:44.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:44.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:44.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:44.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:44.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:44.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:44.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-18 20:01:44.427][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.433][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.438][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.452][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-18 20:01:44.458][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-18 20:01:44.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-18 20:01:44.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-18 20:01:44.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-18 20:01:44.463][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-04-18 20:01:44.464][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-04-18 20:01:44.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-18 20:01:44.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:44.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:44.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:44.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:44.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:44.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-18 20:01:44.492][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-18 20:01:44.494][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-04-18 20:01:44.496][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-04-18 20:01:44.497][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-18 20:01:44.498][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-18 20:01:44.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-18 20:01:44.502][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-18 20:01:44.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-18 20:01:44.505][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-18 20:01:44.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 11.210   0.694  14.278

CHECK results for biodbHmdb on lconway

Summary

Command output

Installation output

Tests output

Example timings