Back to Long Tests report for BioC 3.21

This page was generated on 2025-04-12 23:55 -0400 (Sat, 12 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4634
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4572
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/30HostnameOS / ArchCHECK
biodbChebi 1.13.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-04-12 09:55 -0400 (Sat, 12 Apr 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: 686a27c
git_last_commit_date: 2024-10-29 11:04:36 -0400 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK  
palomino7Windows Server 2022 Datacenter / x64  OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on palomino7

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.13.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz
StartedAt: 2025-04-12 16:02:58 -0400 (Sat, 12 Apr 2025)
EndedAt: 2025-04-12 16:06:38 -0400 (Sat, 12 Apr 2025)
EllapsedTime: 219.9 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-04-12 16:03:42.127][biodb::testContext]
biodb.INFO [2025-04-12 16:03:42.130][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-12 16:03:42.131][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-04-12 16:03:42.133][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-12 16:03:42.134][biodb::testContext]
biodb.INFO [2025-04-12 16:03:42.141][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-04-12 16:03:42.144][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-12 16:03:42.194][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-12 16:03:42.196][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-12 16:03:42.197][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-12 16:03:42.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.201][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-12 16:03:42.218][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-12 16:03:42.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.222][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-12 16:03:42.224][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-12 16:03:42.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.228][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-12 16:03:42.229][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-12 16:03:42.230][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-12 16:03:42.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.235][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-12 16:03:42.236][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-12 16:03:42.237][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-12 16:03:42.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.242][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-12 16:03:42.243][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-12 16:03:42.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.247][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-12 16:03:42.248][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-12 16:03:42.250][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-12 16:03:42.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.254][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-12 16:03:42.255][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-12 16:03:42.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.260][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-12 16:03:42.261][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-12 16:03:42.262][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-12 16:03:42.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.267][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-12 16:03:42.268][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-12 16:03:42.269][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-12 16:03:42.270][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-12 16:03:42.271][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-12 16:03:42.272][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-12 16:03:42.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.277][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-12 16:03:42.278][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-12 16:03:42.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.283][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-12 16:03:42.284][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-12 16:03:42.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.288][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-12 16:03:42.289][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-12 16:03:42.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.294][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-12 16:03:42.295][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-12 16:03:42.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.299][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-12 16:03:42.301][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-12 16:03:42.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.305][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-12 16:03:42.306][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-12 16:03:42.309][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-12 16:03:42.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.314][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-12 16:03:42.315][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-12 16:03:42.316][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-12 16:03:42.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.323][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-12 16:03:42.350][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.363][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-12 16:03:42.365][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.366][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:03:42.368][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.374][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.375][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.377][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.378][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-12 16:03:42.379][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:03:42.380][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.381][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-12 16:03:42.382][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:03:42.384][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.385][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.386][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-12 16:03:42.386][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-12 16:03:42.386][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-12 16:03:42.386][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-12 16:03:42.386][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-12 16:03:42.387][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-12 16:03:42.388][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.389][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.391][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:03:42.392][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.393][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.394][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.395][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.396][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:03:42.397][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:03:42.399][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.400][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.401][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-12 16:03:42.403][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.404][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-12 16:03:42.405][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.407][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:03:42.408][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.409][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.410][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.411][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.413][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-12 16:03:42.414][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:03:42.415][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.416][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-12 16:03:42.418][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:03:42.419][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.420][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.421][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-12 16:03:42.421][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-12 16:03:42.421][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-12 16:03:42.421][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-12 16:03:42.421][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-12 16:03:42.422][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-12 16:03:42.423][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.426][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:03:42.427][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.429][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.430][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.431][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:03:42.432][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:03:42.434][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.435][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.436][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-12 16:03:42.438][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.439][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-12 16:03:42.440][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.442][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:03:42.443][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.444][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.445][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.446][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.448][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-12 16:03:42.449][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:03:42.450][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.451][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-12 16:03:42.452][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:03:42.454][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.455][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.456][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.457][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-12 16:03:42.458][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.459][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.461][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:03:42.462][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.463][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.464][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.465][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.466][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:03:42.467][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:03:42.468][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.470][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.471][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-12 16:03:42.473][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.474][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-12 16:03:42.475][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.477][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:03:42.478][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.479][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.480][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.481][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.482][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-12 16:03:42.484][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:03:42.485][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.486][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-12 16:03:42.487][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:03:42.488][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.490][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.491][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.492][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-12 16:03:42.493][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.494][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.495][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:03:42.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.499][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.500][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.501][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:03:42.502][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:03:42.503][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.504][self$setPropertyValue]
biodb.DEBUG[2025-04-12 16:03:42.508][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-12 16:03:42.509][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.609][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-12 16:03:42.613][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-12 16:03:42.615][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-12 16:03:42.616][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-12 16:03:42.618][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-12 16:03:42.620][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-12 16:03:42.621][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-12 16:03:42.623][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-12 16:03:42.624][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-12 16:03:42.626][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-12 16:03:42.627][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-12 16:03:42.629][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-12 16:03:42.631][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-12 16:03:42.632][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-12 16:03:42.634][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-12 16:03:42.635][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-12 16:03:42.637][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-12 16:03:42.638][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-12 16:03:42.640][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-12 16:03:42.641][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-12 16:03:42.643][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-12 16:03:42.644][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-12 16:03:42.646][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-12 16:03:42.648][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-12 16:03:42.649][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-12 16:03:42.651][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-12 16:03:42.652][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-12 16:03:42.654][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-12 16:03:42.655][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-12 16:03:42.657][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-12 16:03:42.658][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-12 16:03:42.660][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-12 16:03:42.662][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-12 16:03:42.663][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-12 16:03:42.665][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-12 16:03:42.666][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-12 16:03:42.668][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-12 16:03:42.669][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-12 16:03:42.671][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-12 16:03:42.672][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-12 16:03:42.674][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-12 16:03:42.676][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-12 16:03:42.677][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-12 16:03:42.679][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-12 16:03:42.680][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-12 16:03:42.682][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-12 16:03:42.683][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-12 16:03:42.685][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-12 16:03:42.687][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-12 16:03:42.688][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-12 16:03:42.690][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-12 16:03:42.691][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-12 16:03:42.693][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-12 16:03:42.694][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-12 16:03:42.696][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-12 16:03:42.697][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-12 16:03:42.699][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-12 16:03:42.701][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-12 16:03:42.702][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-12 16:03:42.704][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-12 16:03:42.705][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-12 16:03:42.707][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-12 16:03:42.708][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-12 16:03:42.710][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-12 16:03:42.711][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-12 16:03:42.713][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-12 16:03:42.715][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-12 16:03:42.716][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-12 16:03:42.718][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-12 16:03:42.719][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-12 16:03:42.721][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-12 16:03:42.722][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-12 16:03:42.724][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-12 16:03:42.725][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-12 16:03:42.727][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-12 16:03:42.728][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-12 16:03:42.730][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-12 16:03:42.732][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-12 16:03:42.733][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-12 16:03:42.735][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-12 16:03:42.736][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-12 16:03:42.738][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-12 16:03:42.739][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-12 16:03:42.763][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-12 16:03:42.766][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-04-12 16:03:42.769][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-12 16:03:42.770][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.773][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-12 16:03:42.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:42.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:42.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:42.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:42.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:42.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:42.914][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-04-12 16:03:42.923][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-04-12 16:03:42.925][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.926][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.927][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.929][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-12 16:03:42.930][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.931][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.932][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.933][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-04-12 16:03:42.934][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-12 16:03:42.936][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-12 16:03:42.937][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.938][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-04-12 16:03:42.939][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-04-12 16:03:42.941][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-04-12 16:03:42.942][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-12 16:03:42.943][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-12 16:03:42.943][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-12 16:03:42.943][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-12 16:03:42.944][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-12 16:03:42.945][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.946][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.948][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-12 16:03:42.949][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-12 16:03:42.950][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-12 16:03:42.951][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-12 16:03:42.952][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:42.952][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-04-12 16:03:42.953][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-12 16:03:42.954][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-12 16:03:42.956][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-12 16:03:42.957][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-04-12 16:03:42.957][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-04-12 16:03:42.962][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-12 16:03:42.964][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-12 16:03:42.966][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-04-12 16:03:42.968][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-12 16:03:42.969][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-12 16:03:42.971][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-12 16:03:43.022][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-04-12 16:03:43.024][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-04-12 16:03:43.027][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-04-12 16:03:43.031][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-04-12 16:03:43.035][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-12 16:03:43.036][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-12 16:03:43.038][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-04-12 16:03:43.039][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-04-12 16:03:43.049][biodb::testThat]
biodb.INFO [2025-04-12 16:03:43.050][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-12 16:03:43.052][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:43.053][biodb::testThat]
biodb.TRACE[2025-04-12 16:03:43.058][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-04-12 16:03:43.061][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:43.064][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:43.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:43.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:43.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:43.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:43.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:43.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:43.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:43.152][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.173][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.174][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.204][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.235][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.236][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.245][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:43.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:43.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.274][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.285][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:43.286][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:43.380][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-04-12 16:03:43.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:43.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:43.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:43.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:43.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:43.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:43.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:43.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.581][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.650][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:43.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.685][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.719][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.720][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:43.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:43.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.778][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.793][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:43.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:43.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.827][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:43.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.895][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.896][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:43.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:43.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.934][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:43.991][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:43.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:43.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:43.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.003][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.004][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.013][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.025][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.043][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.045][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.053][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.055][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.074][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.076][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.085][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.101][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.102][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.123][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-04-12 16:03:44.154][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:44.155][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:44.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:44.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:44.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:44.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:44.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:44.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:44.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:44.173][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.197][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.207][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.208][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.233][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.243][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.252][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:44.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.272][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.282][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:44.283][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:44.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:44.381][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-04-12 16:03:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:44.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:44.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:44.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:44.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:44.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.618][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:44.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.670][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:44.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.689][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:44.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:44.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.791][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.793][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.825][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.826][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.864][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.869][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.899][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:44.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:44.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:44.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.984][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:44.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:44.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:44.995][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:44.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:44.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:44.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.009][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.011][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.037][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.048][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.079][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.089][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.099][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.110][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-04-12 16:03:45.112][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:45.113][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:45.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:45.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:45.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:45.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:45.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:45.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:45.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:45.130][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.140][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.149][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.179][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.180][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.189][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:45.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.194][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:45.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.213][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.223][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:45.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.228][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:45.290][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-04-12 16:03:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:45.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:45.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:45.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:45.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.335][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:45.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:45.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.435][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.543][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.563][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.577][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.582][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.611][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.678][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.702][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.716][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.718][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.750][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.784][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.803][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:45.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:45.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.814][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:45.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:45.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:45.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:45.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:45.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:45.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:45.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:45.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.864][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:45.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:45.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.889][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:45.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:45.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:45.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:45.910][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:45.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:45.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:45.913][ef$get] fields variable is a list.
biodb.INFO [2025-04-12 16:03:45.925][biodb::testThat]
biodb.INFO [2025-04-12 16:03:45.926][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-12 16:03:45.927][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:45.929][biodb::testThat]
biodb.DEBUG[2025-04-12 16:03:45.931][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-04-12 16:03:45.937][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-12 16:03:45.961][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2025-04-12 16:03:45.964][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2025-04-12 16:03:45.993][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-04-12 16:03:45.995][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:45.997][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:45.999][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:46.001][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:46.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:46.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:46.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:46.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:46.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:46.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:46.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:46.020][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2025-04-12 16:03:46.038][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:46.040][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:46.041][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2025-04-12 16:03:46.823][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2025-04-12 16:03:47.188][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:47.191][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2025-04-12 16:03:47.205][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2025-04-12 16:03:47.209][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2025-04-12 16:03:47.211][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:47.212][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-04-12 16:03:47.214][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:47.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:47.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:47.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:47.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:47.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:47.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:47.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:47.248][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.258][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:47.259][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:47.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:47.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.269][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:47.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:47.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.279][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:47.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:47.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:47.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.298][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.303][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.308][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:47.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.313][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.328][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.338][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:47.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:47.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:47.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:47.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:47.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:47.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:47.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:47.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:47.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:47.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:47.411][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.421][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:47.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:47.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:47.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:47.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.431][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:47.432][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:47.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:47.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:47.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:47.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:47.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:47.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:47.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.460][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.470][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:47.471][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.529][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:47.530][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:47.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.539][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:47.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:47.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:47.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:47.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:47.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:47.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:47.598][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.607][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:47.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:47.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:47.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.617][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:47.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:47.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:47.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:47.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:47.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:47.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:47.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:47.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.657][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.662][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:47.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.667][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:47.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:47.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:47.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:47.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:47.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.703][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:47.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:47.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:47.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.792][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-04-12 16:03:47.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-12 16:03:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-12 16:03:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:03:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:03:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:03:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:03:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-12 16:03:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-12 16:03:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:03:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:03:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:03:47.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:03:47.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-12 16:03:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-12 16:03:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:03:47.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-12 16:03:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:03:47.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-12 16:03:47.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:03:47.861][biodb::testThat]
biodb.INFO [2025-04-12 16:03:47.862][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-12 16:03:47.863][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:47.864][biodb::testThat]
biodb.TRACE[2025-04-12 16:03:47.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.872][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.874][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-04-12 16:03:47.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:47.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:47.927][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-04-12 16:03:47.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-04-12 16:03:47.949][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:47.964][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-04-12 16:03:47.966][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:47.985][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-04-12 16:03:47.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:48.000][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:48.003][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:03:48.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:48.022][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:03:48.025][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-04-12 16:03:48.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:48.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:48.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.048][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.051][ef$get] fields variable is a list.
biodb.INFO [2025-04-12 16:03:48.058][biodb::testThat]
biodb.INFO [2025-04-12 16:03:48.059][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-12 16:03:48.060][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:48.062][biodb::testThat]
biodb.TRACE[2025-04-12 16:03:48.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:48.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:48.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:48.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:48.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:48.157][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:48.161][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:48.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:03:48.164][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:48.166][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-04-12 16:03:48.190][biodb::testThat]
biodb.INFO [2025-04-12 16:03:48.192][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-12 16:03:48.193][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:48.194][biodb::testThat]
biodb.TRACE[2025-04-12 16:03:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:48.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:48.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:48.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:48.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:48.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:48.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.302][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-12 16:03:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-12 16:03:48.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-12 16:03:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-12 16:03:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:03:48.324][biodb::testThat]
biodb.INFO [2025-04-12 16:03:48.325][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-12 16:03:48.326][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:48.328][biodb::testThat]
biodb.INFO [2025-04-12 16:03:48.339][biodb::testThat]
biodb.INFO [2025-04-12 16:03:48.341][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-12 16:03:48.342][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:48.343][biodb::testThat]
biodb.INFO [2025-04-12 16:03:48.356][biodb::testThat]
biodb.INFO [2025-04-12 16:03:48.357][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-12 16:03:48.358][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:48.359][biodb::testThat]
biodb.DEBUG[2025-04-12 16:03:48.369][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-04-12 16:03:48.786][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-04-12 16:03:49.411][biodb::testThat]
biodb.INFO [2025-04-12 16:03:49.413][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-12 16:03:49.414][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:49.415][biodb::testThat]
biodb.DEBUG[2025-04-12 16:03:49.720][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-04-12 16:03:50.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:50.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:50.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:50.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:50.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.031][ef$get] fields variable is a list.
biodb.INFO [2025-04-12 16:03:50.034][biodb::testThat]
biodb.INFO [2025-04-12 16:03:50.035][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-04-12 16:03:50.036][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:03:50.037][biodb::testThat]
biodb.TRACE[2025-04-12 16:03:50.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.175][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:03:50.178][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.181][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:03:50.247][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.251][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:03:50.254][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.257][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-04-12 16:03:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:03:50.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:03:50.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:50.318][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:50.333][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:50.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:03:50.337][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:50.351][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:03:50.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:50.369][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-04-12 16:03:50.409][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:50.411][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-04-12 16:03:50.413][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:50.414][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:50.416][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:50.417][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:50.418][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:50.419][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:50.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:50.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:50.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:50.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:50.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:50.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:50.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:50.601][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2025-04-12 16:03:50.615][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:50.616][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:50.629][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2025-04-12 16:03:50.911][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2025-04-12 16:03:51.194][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:51.197][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2025-04-12 16:03:51.201][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2025-04-12 16:03:51.205][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2025-04-12 16:03:51.207][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:51.208][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:51.210][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:51.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.238][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:51.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:51.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:51.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.249][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:51.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:51.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:51.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:51.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:51.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:51.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:51.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:51.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:51.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:51.284][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:51.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.288][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:51.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.293][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:51.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:51.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:51.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:51.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:51.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.320][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:51.322][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:51.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.331][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:51.333][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:51.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:51.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:51.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.395][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-04-12 16:03:51.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:51.426][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:51.428][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:03:51.429][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:51.446][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:03:51.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:51.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:51.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:51.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:51.509][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-04-12 16:03:51.510][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:51.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-04-12 16:03:51.515][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:51.516][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:51.518][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:51.519][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:51.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:51.522][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:51.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:51.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:51.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:51.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:51.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:51.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:51.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:51.540][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2025-04-12 16:03:51.544][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:51.545][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:51.547][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2025-04-12 16:03:51.835][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2025-04-12 16:03:52.119][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:52.122][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2025-04-12 16:03:52.127][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2025-04-12 16:03:52.131][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2025-04-12 16:03:52.133][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:52.135][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:52.136][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:52.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.163][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.172][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:52.174][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:52.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:52.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.182][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:52.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:52.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:52.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:52.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:52.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:52.203][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:52.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:52.213][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:52.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.216][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:52.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:52.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:52.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:52.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.245][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:52.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:52.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:52.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.255][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:52.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:52.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:52.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:52.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:52.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.313][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-04-12 16:03:52.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:03:52.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:03:52.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:03:52.362][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:03:52.364][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:03:52.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:52.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:52.409][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-04-12 16:03:52.410][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:52.412][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-04-12 16:03:52.414][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:52.415][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:52.416][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:52.418][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:52.419][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:52.420][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:52.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:52.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:52.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:52.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:52.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:52.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:52.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:52.437][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2025-04-12 16:03:52.440][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:52.441][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:52.442][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2025-04-12 16:03:52.728][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2025-04-12 16:03:53.008][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:53.013][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2025-04-12 16:03:53.020][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2025-04-12 16:03:53.026][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2025-04-12 16:03:53.029][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:53.032][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:53.034][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:53.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:53.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:53.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:53.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:53.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:53.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:53.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:53.057][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.067][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:53.068][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:53.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:53.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:53.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:53.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:53.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:53.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:53.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:53.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:53.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.092][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:53.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:53.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:53.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.102][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:53.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:53.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.112][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:53.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:53.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.122][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:53.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:53.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:53.184][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-04-12 16:03:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:53.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:53.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:53.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:53.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:53.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:53.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:53.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:53.223][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-04-12 16:03:53.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:53.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-04-12 16:03:53.227][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:53.229][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:53.230][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:53.231][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:53.232][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:53.234][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:53.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:53.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:53.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:53.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:53.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:53.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:53.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:53.250][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2025-04-12 16:03:53.253][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:53.254][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:53.256][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2025-04-12 16:03:53.542][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2025-04-12 16:03:53.836][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:53.839][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2025-04-12 16:03:53.843][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2025-04-12 16:03:53.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2025-04-12 16:03:53.849][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:53.851][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:53.852][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:53.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:53.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:53.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:53.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:53.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:53.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:53.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:53.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.879][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:53.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:53.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.884][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:53.886][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:53.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:53.891][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:53.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:53.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:53.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:53.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:53.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.905][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:53.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:53.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:53.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.915][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:53.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:53.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:53.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:53.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.925][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:53.926][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:53.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.935][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:53.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:53.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:53.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:53.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:53.989][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-04-12 16:03:53.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:54.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:54.030][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-04-12 16:03:54.031][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:54.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-04-12 16:03:54.035][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:54.036][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:54.037][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:54.039][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:54.040][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:54.041][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:54.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:54.058][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2025-04-12 16:03:54.061][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:54.062][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:54.064][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2025-04-12 16:03:54.349][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2025-04-12 16:03:54.630][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:54.633][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2025-04-12 16:03:54.637][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2025-04-12 16:03:54.641][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2025-04-12 16:03:54.643][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:54.644][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:54.646][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:54.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:54.662][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:54.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:54.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.677][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:54.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:54.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:54.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:54.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:54.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:54.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.692][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:54.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:54.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.697][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:54.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:54.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.707][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:54.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:54.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:54.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.718][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:54.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:54.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.728][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:54.729][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:54.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:54.789][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-04-12 16:03:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:54.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:54.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:54.827][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-04-12 16:03:54.829][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:54.830][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-04-12 16:03:54.832][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:54.833][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:54.835][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:54.836][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:54.837][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:54.838][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:54.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:54.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:54.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:54.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:54.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:54.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:54.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:54.855][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2025-04-12 16:03:54.859][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:54.860][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:54.861][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2025-04-12 16:03:55.142][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2025-04-12 16:03:55.434][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:55.436][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2025-04-12 16:03:55.441][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2025-04-12 16:03:55.445][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2025-04-12 16:03:55.447][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:55.448][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:55.450][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:55.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:55.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:55.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:55.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:55.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:55.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:55.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:55.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.477][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:55.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:55.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:55.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:55.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:55.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:55.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:55.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:55.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:55.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:55.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:55.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.526][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:55.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.531][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:55.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:55.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:55.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:55.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:55.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:55.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.555][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:55.557][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:55.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.560][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:55.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:55.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:55.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:55.622][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-04-12 16:03:55.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:55.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:55.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:55.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:55.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:55.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:55.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:55.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:55.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:55.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:55.651][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-04-12 16:03:55.652][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:55.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-04-12 16:03:55.656][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:55.657][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:55.659][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:55.660][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:55.661][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:55.662][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:55.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:55.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:55.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:55.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:55.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:55.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:55.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:55.679][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2025-04-12 16:03:55.682][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:55.683][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:55.685][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2025-04-12 16:03:55.981][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2025-04-12 16:03:56.284][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:56.287][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2025-04-12 16:03:56.292][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2025-04-12 16:03:56.295][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2025-04-12 16:03:56.297][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:56.299][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:56.300][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:56.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:56.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:56.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:56.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:56.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:56.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:56.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:56.318][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.328][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:56.329][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:56.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:56.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:56.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:56.339][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:56.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:56.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:56.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:56.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:56.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:56.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:56.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:56.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:56.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.367][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:56.368][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:56.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:56.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:56.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.385][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:56.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:56.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:56.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:56.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:56.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.405][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:56.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:56.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.414][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:56.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:56.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:56.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:56.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:56.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:56.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:56.481][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-04-12 16:03:56.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:56.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:56.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:56.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:56.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:56.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:56.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:56.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:56.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:56.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:56.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:56.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:56.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:56.510][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-04-12 16:03:56.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:56.514][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-04-12 16:03:56.515][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:56.517][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:56.518][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:56.519][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:56.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:56.522][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:56.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:56.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:56.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:56.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:56.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:56.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:56.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:56.539][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2025-04-12 16:03:56.542][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:56.544][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:56.545][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2025-04-12 16:03:56.838][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2025-04-12 16:03:57.122][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:57.124][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2025-04-12 16:03:57.129][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2025-04-12 16:03:57.132][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2025-04-12 16:03:57.134][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:57.136][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:57.137][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:57.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:57.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:57.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:57.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:57.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:57.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:57.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:57.154][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.163][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:57.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:57.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:57.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:57.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.173][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:57.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:57.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:57.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:57.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:57.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:57.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.193][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:57.194][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:57.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.202][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:57.203][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:57.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.207][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:57.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.212][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:57.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:57.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:57.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:57.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:57.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:57.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:57.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:57.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:57.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:57.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:57.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:57.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:57.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:57.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:57.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:57.303][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-04-12 16:03:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:57.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:57.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:57.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:57.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:57.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:57.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:57.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:57.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:57.332][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-04-12 16:03:57.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:57.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-04-12 16:03:57.337][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:57.338][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:57.339][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:57.340][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:57.342][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:57.343][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:57.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:57.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:57.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:57.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:57.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:57.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:57.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:57.360][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2025-04-12 16:03:57.363][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:57.364][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:57.365][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2025-04-12 16:03:57.649][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2025-04-12 16:03:57.938][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:57.941][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2025-04-12 16:03:57.945][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2025-04-12 16:03:57.949][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2025-04-12 16:03:57.951][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:57.961][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:57.962][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:57.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:57.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:57.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:57.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:57.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:57.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:57.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:57.979][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:57.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.989][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:57.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:57.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.000][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:58.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:58.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:58.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:58.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:58.011][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:58.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:58.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:58.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.033][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:58.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:58.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.053][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:58.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:58.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.063][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:58.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:58.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:58.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:58.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:58.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:58.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.130][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-04-12 16:03:58.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:58.159][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-04-12 16:03:58.160][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:58.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-04-12 16:03:58.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:58.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:58.166][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:58.168][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:58.169][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:58.170][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:58.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:58.186][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2025-04-12 16:03:58.189][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:58.191][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:58.192][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2025-04-12 16:03:58.478][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2025-04-12 16:03:58.761][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:58.764][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2025-04-12 16:03:58.768][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2025-04-12 16:03:58.772][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2025-04-12 16:03:58.774][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:58.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:58.777][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:58.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:58.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:58.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:58.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:58.794][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.804][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:58.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:58.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:58.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:58.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.814][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:58.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:58.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:58.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:58.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:58.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:58.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:58.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:58.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:58.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:58.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:58.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.848][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:58.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:58.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.867][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:58.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:58.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:58.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:58.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.877][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:58.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:58.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:58.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:58.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.887][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:58.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:58.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:58.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:58.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:58.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:58.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:58.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.963][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-04-12 16:03:58.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:58.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:58.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:58.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:58.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:58.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:58.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:58.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:59.003][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-04-12 16:03:59.004][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:59.006][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-04-12 16:03:59.008][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:59.009][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:59.010][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:59.011][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:59.013][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:59.014][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:59.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:59.030][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2025-04-12 16:03:59.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:59.035][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:59.036][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2025-04-12 16:03:59.323][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2025-04-12 16:03:59.604][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:03:59.606][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2025-04-12 16:03:59.611][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2025-04-12 16:03:59.614][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2025-04-12 16:03:59.617][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:03:59.618][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:03:59.619][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:03:59.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:03:59.636][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.646][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:59.647][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:59.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:03:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:03:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.656][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:59.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:59.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:03:59.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:03:59.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:59.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:59.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:03:59.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:03:59.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:59.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:59.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:03:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:03:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:59.686][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:03:59.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.690][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:59.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:59.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:03:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:59.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:59.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:59.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:59.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:03:59.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.710][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:59.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:59.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:03:59.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:03:59.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.720][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:59.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:59.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:03:59.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:03:59.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:59.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:59.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:03:59.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:03:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:03:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:03:59.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:03:59.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:59.787][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-04-12 16:03:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:59.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:03:59.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:59.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:03:59.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:03:59.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:03:59.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:59.816][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-04-12 16:03:59.817][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:03:59.819][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-04-12 16:03:59.821][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:03:59.822][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:03:59.824][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:03:59.825][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:03:59.826][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:03:59.827][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:03:59.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:03:59.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:03:59.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:03:59.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:03:59.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:03:59.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:03:59.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:03:59.844][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2025-04-12 16:03:59.847][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:03:59.848][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:03:59.850][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2025-04-12 16:04:00.132][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2025-04-12 16:04:00.421][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:00.423][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2025-04-12 16:04:00.428][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2025-04-12 16:04:00.432][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2025-04-12 16:04:00.434][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:00.435][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:00.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:00.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:00.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:00.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:00.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:00.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:00.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:00.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:00.454][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.464][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:00.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:00.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:00.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:00.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.473][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:00.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:00.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:00.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:00.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:00.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:00.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:00.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:00.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:00.494][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:00.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:00.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:00.504][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:00.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.508][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:00.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:00.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.518][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.519][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.528][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:00.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:00.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:00.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.538][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:00.539][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:00.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.543][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.547][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:00.557][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:00.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:00.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:00.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:00.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:00.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:00.612][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-04-12 16:04:00.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:00.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:00.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:00.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:00.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:00.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:00.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:00.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:00.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:00.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:00.641][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-04-12 16:04:00.642][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:00.644][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-04-12 16:04:00.646][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:00.647][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:00.648][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:00.650][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:00.651][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:00.652][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:00.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:00.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:00.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:00.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:00.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:00.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:00.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:00.668][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2025-04-12 16:04:00.671][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:00.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:00.674][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2025-04-12 16:04:00.956][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2025-04-12 16:04:01.239][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:01.242][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2025-04-12 16:04:01.246][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2025-04-12 16:04:01.250][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2025-04-12 16:04:01.252][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:01.254][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:01.255][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:01.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:01.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:01.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:01.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:01.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:01.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:01.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:01.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.282][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:01.283][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:01.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.287][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.291][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:01.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:01.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:01.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:01.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:01.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:01.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:01.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:01.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.316][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:01.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.321][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.326][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.327][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:01.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:01.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:01.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.346][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:01.347][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:01.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.351][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:01.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:01.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.356][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:01.357][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:01.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:01.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:01.408][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-04-12 16:04:01.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:01.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:01.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:01.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:01.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:01.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:01.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:01.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:01.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:01.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:01.437][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-04-12 16:04:01.438][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:01.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-04-12 16:04:01.442][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:01.443][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:01.444][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:01.446][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:01.447][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:01.448][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:01.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:01.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:01.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:01.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:01.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:01.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:01.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:01.464][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2025-04-12 16:04:01.467][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:01.468][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:01.470][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2025-04-12 16:04:01.762][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2025-04-12 16:04:02.041][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:02.044][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2025-04-12 16:04:02.048][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2025-04-12 16:04:02.052][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2025-04-12 16:04:02.054][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:02.056][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:02.057][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:02.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:02.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:02.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:02.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:02.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:02.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:02.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:02.074][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.076][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.084][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:02.086][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:02.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.089][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:02.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:02.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:02.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:02.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:02.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:02.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:02.116][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:02.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.128][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:02.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.133][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:02.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:02.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:02.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:02.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.158][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:02.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:02.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.168][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:02.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:02.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:02.220][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-04-12 16:04:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:02.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:02.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:02.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:02.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:02.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:02.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:02.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:02.250][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-04-12 16:04:02.251][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:02.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-04-12 16:04:02.254][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:02.256][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:02.257][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:02.258][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:02.260][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:02.261][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:02.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:02.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:02.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:02.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:02.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:02.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:02.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:02.278][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2025-04-12 16:04:02.281][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:02.282][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:02.284][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2025-04-12 16:04:02.566][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2025-04-12 16:04:02.856][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:02.859][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2025-04-12 16:04:02.864][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2025-04-12 16:04:02.867][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2025-04-12 16:04:02.869][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:02.871][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:02.872][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:02.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:02.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:02.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:02.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:02.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:02.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:02.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:02.889][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:02.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:02.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.899][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:02.900][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:02.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.909][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:02.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:02.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:02.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:02.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:02.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:02.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:02.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:02.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:02.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.943][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:02.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:02.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.968][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:02.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:02.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:02.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.978][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:02.979][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:02.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:02.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:02.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:02.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.060][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-04-12 16:04:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:03.090][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-04-12 16:04:03.091][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:03.093][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-04-12 16:04:03.095][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:03.096][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:03.097][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:03.099][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:03.100][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:03.101][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:03.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:03.118][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2025-04-12 16:04:03.121][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:03.122][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:03.124][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2025-04-12 16:04:03.407][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2025-04-12 16:04:03.708][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:03.710][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2025-04-12 16:04:03.715][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2025-04-12 16:04:03.719][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2025-04-12 16:04:03.721][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:03.722][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:03.724][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:03.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:03.749][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.759][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:03.760][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:03.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:03.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:03.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.769][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:03.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:03.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:03.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:03.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:03.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:03.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:03.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:03.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:03.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:03.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:03.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:03.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:03.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.803][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:03.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.808][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:03.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:03.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.822][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:03.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:03.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:03.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.832][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:03.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:03.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.837][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.842][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:03.843][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:03.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:03.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:03.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.899][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-04-12 16:04:03.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:03.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:03.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:03.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:03.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:03.928][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-04-12 16:04:03.929][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:03.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-04-12 16:04:03.933][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:03.934][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:03.935][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:03.937][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:03.938][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:03.939][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:03.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:03.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:03.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:03.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:03.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:03.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:03.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:03.956][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2025-04-12 16:04:03.959][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:03.960][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:03.962][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2025-04-12 16:04:04.248][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2025-04-12 16:04:04.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:04.535][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2025-04-12 16:04:04.539][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2025-04-12 16:04:04.543][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2025-04-12 16:04:04.545][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:04.546][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:04.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:04.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:04.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.575][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:04.576][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:04.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:04.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:04.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:04.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:04.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:04.595][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:04.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:04.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:04.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:04.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:04.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:04.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.618][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:04.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:04.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.623][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:04.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:04.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.638][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:04.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:04.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:04.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:04.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.648][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:04.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:04.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:04.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:04.659][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:04.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:04.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:04.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:04.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:04.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:04.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:04.715][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-04-12 16:04:04.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:04.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:04.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:04.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:04.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:04.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:04.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:04.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:04.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:04.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:04.751][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-04-12 16:04:04.752][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:04.754][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-04-12 16:04:04.755][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:04.757][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:04.758][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:04.759][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:04.761][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:04.762][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:04.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:04.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:04.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:04.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:04.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:04.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:04.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:04.778][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2025-04-12 16:04:04.782][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:04.783][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:04.784][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2025-04-12 16:04:05.066][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2025-04-12 16:04:05.363][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:05.365][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2025-04-12 16:04:05.371][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2025-04-12 16:04:05.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2025-04-12 16:04:05.380][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:05.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:05.385][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:05.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:05.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:05.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:05.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:05.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:05.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:05.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:05.407][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.408][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:05.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:05.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:05.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.426][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:05.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:05.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:05.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:05.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:05.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:05.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:05.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:05.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:05.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:05.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:05.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:05.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.456][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:05.457][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:05.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.461][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:05.462][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:05.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:05.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.480][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:05.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:05.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:05.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:05.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.490][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:05.491][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:05.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:05.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:05.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:05.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:05.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:05.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:05.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:05.557][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-04-12 16:04:05.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:05.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:05.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:05.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:05.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:05.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:05.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:05.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:05.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:05.587][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-04-12 16:04:05.588][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:05.590][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-04-12 16:04:05.591][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:05.593][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:05.594][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:05.595][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:05.597][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:05.598][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:05.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:05.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:05.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:05.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:05.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:05.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:05.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:05.615][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2025-04-12 16:04:05.618][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:05.619][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:05.620][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2025-04-12 16:04:05.901][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2025-04-12 16:04:06.190][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:06.193][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2025-04-12 16:04:06.197][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2025-04-12 16:04:06.201][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2025-04-12 16:04:06.203][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:06.204][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:06.206][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:06.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:06.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:06.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:06.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:06.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:06.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:06.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:06.223][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:06.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:06.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.243][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:06.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:06.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:06.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:06.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:06.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:06.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:06.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:06.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:06.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:06.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:06.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:06.274][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:06.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.277][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:06.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.297][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:06.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:06.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.307][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:06.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:06.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:06.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:06.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:06.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:06.383][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-04-12 16:04:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:06.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:06.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:06.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:06.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:06.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:06.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:06.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:06.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:06.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:06.412][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-04-12 16:04:06.413][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:06.415][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-04-12 16:04:06.417][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:06.418][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:06.419][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:06.420][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:06.422][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:06.423][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:06.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:06.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:06.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:06.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:06.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:06.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:06.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:06.440][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2025-04-12 16:04:06.443][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:06.444][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:06.445][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2025-04-12 16:04:06.726][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2025-04-12 16:04:07.012][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:07.015][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2025-04-12 16:04:07.019][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2025-04-12 16:04:07.023][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2025-04-12 16:04:07.025][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:07.026][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:07.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:07.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:07.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:07.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:07.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:07.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:07.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:07.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:07.045][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.054][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:07.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:07.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:07.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:07.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.064][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:07.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:07.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:07.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:07.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:07.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:07.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:07.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:07.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:07.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:07.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:07.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:07.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.099][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:07.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.104][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:07.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.118][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:07.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:07.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.128][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:07.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:07.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:07.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:07.139][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:07.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:07.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:07.195][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-04-12 16:04:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:07.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:07.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:07.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:07.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:07.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:07.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:07.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:07.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:07.225][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-04-12 16:04:07.226][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:07.228][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-04-12 16:04:07.229][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:07.231][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:07.232][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:07.233][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:07.234][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:07.236][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:07.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:07.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:07.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:07.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:07.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:07.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:07.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:07.252][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2025-04-12 16:04:07.255][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:07.257][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:07.258][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2025-04-12 16:04:07.541][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2025-04-12 16:04:07.829][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:07.832][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2025-04-12 16:04:07.836][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2025-04-12 16:04:07.839][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2025-04-12 16:04:07.842][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:07.843][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:07.845][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:07.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:07.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:07.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:07.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:07.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:07.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:07.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:07.861][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:07.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:07.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.871][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:07.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:07.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:07.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:07.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.881][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:07.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:07.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:07.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:07.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:07.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:08.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:08.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:08.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:08.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:08.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:08.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:08.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:08.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.085][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:08.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:08.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.090][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:08.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.110][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:08.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:08.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:08.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:08.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.119][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:08.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:08.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.129][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:08.130][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:08.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:08.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.186][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-04-12 16:04:08.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:08.229][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:08.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:04:08.233][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:08.235][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:04:08.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:08.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:08.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:08.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:08.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:08.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:08.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:08.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:08.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:08.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:08.894][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:08.898][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:08.899][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:08.901][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:09.188][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:09.470][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:09.473][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2025-04-12 16:04:09.478][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2025-04-12 16:04:09.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:09.486][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:09.487][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:09.490][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:09.783][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:10.063][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:10.066][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2025-04-12 16:04:10.079][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2025-04-12 16:04:10.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:10.097][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-04-12 16:04:10.098][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:10.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-04-12 16:04:10.102][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:10.103][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:10.104][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:10.105][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:10.107][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:10.108][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:10.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:10.125][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2025-04-12 16:04:10.128][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:10.129][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:10.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2025-04-12 16:04:10.421][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2025-04-12 16:04:10.713][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:10.716][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2025-04-12 16:04:10.721][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2025-04-12 16:04:10.724][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2025-04-12 16:04:10.726][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:10.728][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:10.729][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:10.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:10.746][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.756][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:10.757][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:10.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:10.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:10.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:10.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:10.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:10.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:10.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:10.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:10.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:10.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:10.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:10.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:10.796][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:10.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.799][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.804][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:10.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:10.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.809][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:10.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:10.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.824][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:10.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:10.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:10.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:10.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.834][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:10.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:10.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:10.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:10.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:10.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:10.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:10.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:10.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:10.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:10.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:10.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:10.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:10.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:10.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:10.900][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-04-12 16:04:10.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:10.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:10.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:10.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:10.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:10.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:10.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:10.957][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-04-12 16:04:10.958][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:10.960][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-04-12 16:04:10.961][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:10.963][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:10.964][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:10.965][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:10.967][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:10.968][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:10.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:10.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:10.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:10.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:10.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:10.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:10.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:10.984][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2025-04-12 16:04:10.987][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:10.989][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:10.990][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2025-04-12 16:04:11.271][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2025-04-12 16:04:11.573][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:11.576][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2025-04-12 16:04:11.580][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2025-04-12 16:04:11.584][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2025-04-12 16:04:11.586][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:11.587][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:11.589][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:11.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.605][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.615][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:11.616][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:11.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:11.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:11.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.625][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:11.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:11.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:11.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:11.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:11.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:11.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:11.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:11.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:11.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:11.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.659][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:11.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:11.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.664][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:11.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.689][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:11.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:11.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:11.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.699][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:11.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:11.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:11.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:11.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:11.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:11.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:11.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:11.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:11.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:11.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:11.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.765][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-04-12 16:04:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.805][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:11.809][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:11.811][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:04:11.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:11.815][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:04:11.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:11.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:11.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:11.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:11.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:11.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:11.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:11.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:11.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:11.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:11.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.436][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:12.439][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:12.441][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-04-12 16:04:12.443][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:12.445][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-04-12 16:04:12.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:12.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:12.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:12.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:12.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:12.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:12.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:12.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:12.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:13.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:13.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:13.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:13.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:04:13.088][biodb::testThat]
biodb.INFO [2025-04-12 16:04:13.090][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-04-12 16:04:13.091][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:04:13.092][biodb::testThat]
biodb.TRACE[2025-04-12 16:04:13.096][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:13.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.100][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:13.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.105][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:13.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:13.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:13.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:13.184][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:13.188][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:13.189][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:04:13.191][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:13.193][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:04:13.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:13.224][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:13.228][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:13.229][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:04:13.231][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:13.233][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:04:13.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:13.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:13.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:13.292][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:13.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.318][private$selectFields]
biodb.TRACE[2025-04-12 16:04:13.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:13.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:13.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.333][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.338][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:04:13.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.386][private$selectFields]
biodb.TRACE[2025-04-12 16:04:13.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:13.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:13.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.401][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.407][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:13.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:13.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:13.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.447][private$selectFields]
biodb.TRACE[2025-04-12 16:04:13.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:13.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:13.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.468][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:13.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.473][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:13.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:13.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:13.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:04:13.490][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:13.491][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:13.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:13.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:13.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:13.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:13.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:13.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:13.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:13.509][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:13.512][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:13.514][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:13.516][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:13.798][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:14.103][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:14.105][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2025-04-12 16:04:14.110][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2025-04-12 16:04:14.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:14.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:14.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:14.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:14.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:14.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:14.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:14.126][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-04-12 16:04:14.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:14.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2025-04-12 16:04:14.131][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:14.132][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:14.134][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:14.135][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:14.136][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:14.137][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:14.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:14.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:14.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:14.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:14.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:14.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:14.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:14.153][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2025-04-12 16:04:14.156][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:14.157][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:14.159][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2025-04-12 16:04:14.440][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2025-04-12 16:04:14.721][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:14.724][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2025-04-12 16:04:14.729][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2025-04-12 16:04:14.732][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2025-04-12 16:04:14.734][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:14.736][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:14.737][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:14.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:14.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:14.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:14.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:14.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:14.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:14.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:14.754][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.764][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:14.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:14.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:14.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.773][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:14.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:14.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:14.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.783][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:14.784][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:14.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:14.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:14.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:14.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:14.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:14.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:14.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:14.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:14.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.807][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:14.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.816][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:14.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:14.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:14.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.836][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:14.837][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:14.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:14.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:14.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.845][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:14.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:14.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:14.901][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-04-12 16:04:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:14.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:14.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:14.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:14.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:14.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:14.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:14.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:14.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:14.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:14.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:14.930][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-04-12 16:04:14.931][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:14.933][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2025-04-12 16:04:14.934][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:14.936][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:14.937][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:14.938][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:14.939][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:14.940][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:14.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:14.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:14.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:14.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:14.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:14.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:14.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:14.957][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2025-04-12 16:04:14.960][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:14.961][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:14.963][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2025-04-12 16:04:15.253][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2025-04-12 16:04:15.534][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:15.537][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2025-04-12 16:04:15.541][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2025-04-12 16:04:15.545][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2025-04-12 16:04:15.547][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:15.548][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:15.550][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:15.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:15.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:15.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:15.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:15.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:15.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:15.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:15.566][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.576][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:15.579][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:15.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:15.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.588][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:15.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:15.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:15.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:15.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:15.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:15.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:15.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:15.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:15.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:15.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:15.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:15.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:15.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:15.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.632][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:15.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:15.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.651][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:15.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:15.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:15.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.661][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:15.662][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:15.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:15.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:15.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:15.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:15.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:15.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:15.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:15.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:15.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:15.727][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-04-12 16:04:15.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:15.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:15.747][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:15.748][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:15.750][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:16.031][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:16.323][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:16.326][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2025-04-12 16:04:16.331][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2025-04-12 16:04:16.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:16.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:16.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:16.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:16.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:16.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:16.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:16.349][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-04-12 16:04:16.350][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:16.352][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2025-04-12 16:04:16.354][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:16.355][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:16.356][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:16.358][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:16.359][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:16.360][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:16.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:16.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:16.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:16.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:16.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:16.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:16.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:16.377][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2025-04-12 16:04:16.380][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:16.381][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:16.382][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2025-04-12 16:04:16.677][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2025-04-12 16:04:16.985][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:16.988][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2025-04-12 16:04:16.992][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2025-04-12 16:04:16.996][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2025-04-12 16:04:16.998][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:17.000][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:17.002][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:17.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:17.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:17.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:17.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:17.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:17.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:17.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:17.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.029][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:17.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:17.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:17.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:17.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:17.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:17.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:17.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:17.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:17.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:17.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:17.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.072][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.077][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:17.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:17.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.096][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:17.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:17.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:17.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:17.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:17.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:17.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:17.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:17.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:17.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:17.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:17.173][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-04-12 16:04:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:17.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:17.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:17.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:17.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:17.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:17.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:17.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:17.208][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-04-12 16:04:17.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:17.214][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2025-04-12 16:04:17.216][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:17.217][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:17.219][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:17.220][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:17.221][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:17.222][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:17.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:17.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:17.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:17.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:17.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:17.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:17.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:17.239][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2025-04-12 16:04:17.242][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:17.243][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:17.245][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2025-04-12 16:04:17.523][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2025-04-12 16:04:17.817][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:17.820][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2025-04-12 16:04:17.824][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2025-04-12 16:04:17.828][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2025-04-12 16:04:17.830][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:17.831][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:17.833][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:17.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:17.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:17.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:17.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:17.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:17.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:17.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:17.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:17.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:17.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.868][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:17.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:17.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:17.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:17.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:17.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:17.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:17.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.887][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:17.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.907][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:17.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.911][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:17.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.926][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:17.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:17.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.935][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:17.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:17.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:17.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:17.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:17.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:17.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:18.001][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-04-12 16:04:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:18.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:18.030][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-04-12 16:04:18.031][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:18.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2025-04-12 16:04:18.035][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:18.036][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:18.037][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:18.039][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:18.040][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:18.041][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:18.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:18.057][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2025-04-12 16:04:18.060][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:18.061][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:18.063][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2025-04-12 16:04:18.348][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2025-04-12 16:04:18.629][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:18.632][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2025-04-12 16:04:18.636][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2025-04-12 16:04:18.640][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2025-04-12 16:04:18.642][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:18.643][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:18.645][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:18.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:18.662][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.671][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:18.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:18.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:18.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:18.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.681][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:18.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:18.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:18.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:18.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:18.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:18.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:18.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:18.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:18.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:18.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:18.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.710][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:18.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:18.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.715][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:18.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.720][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:18.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.725][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:18.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.734][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:18.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:18.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:18.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.744][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:18.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:18.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.749][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:18.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:18.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:18.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:18.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:18.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:18.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:18.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:18.819][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-04-12 16:04:18.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:18.853][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:18.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:18.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:18.898][private$selectFields]
biodb.TRACE[2025-04-12 16:04:18.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:18.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:18.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:18.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:18.912][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:18.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.918][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:18.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:18.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:18.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:18.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:18.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:18.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:18.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:18.959][private$selectFields]
biodb.TRACE[2025-04-12 16:04:18.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:18.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:18.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:18.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:18.974][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:18.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:18.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:18.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:18.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:18.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:04:18.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:18.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:18.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:19.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:19.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:19.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:19.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:19.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:19.024][private$selectFields]
biodb.TRACE[2025-04-12 16:04:19.025][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:19.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:19.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:19.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:19.039][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:19.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.044][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:19.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:19.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:19.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:19.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:04:19.061][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:19.062][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:19.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:19.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:19.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:19.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:19.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:19.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:19.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:19.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:19.083][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:19.084][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:19.086][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:19.368][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:19.663][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:19.666][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2025-04-12 16:04:19.671][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2025-04-12 16:04:19.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:19.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:19.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:19.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:19.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:19.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:19.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:19.689][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-04-12 16:04:19.691][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:19.693][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2025-04-12 16:04:19.695][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:19.696][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:19.698][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:19.699][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:19.700][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:19.701][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:19.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:19.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:19.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:19.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:19.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:19.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:19.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:19.718][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2025-04-12 16:04:19.721][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:19.722][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:19.724][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2025-04-12 16:04:20.004][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2025-04-12 16:04:20.284][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:20.286][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2025-04-12 16:04:20.291][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2025-04-12 16:04:20.302][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2025-04-12 16:04:20.305][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:20.306][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:20.307][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:20.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:20.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:20.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:20.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:20.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:20.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:20.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:20.324][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.333][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:20.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:20.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.343][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:20.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:20.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:20.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:20.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:20.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:20.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:20.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:20.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:20.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:20.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:20.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:20.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:20.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:20.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.376][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:20.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.381][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:20.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.395][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:20.396][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:20.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:20.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:20.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.405][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:20.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:20.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:20.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:20.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:20.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:20.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:20.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:20.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:20.469][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-04-12 16:04:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:20.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:20.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:20.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:20.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:20.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:20.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:20.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:20.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:20.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:20.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:20.498][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-04-12 16:04:20.499][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:20.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2025-04-12 16:04:20.502][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:20.503][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:20.505][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:20.506][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:20.507][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:20.508][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:20.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:20.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:20.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:20.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:20.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:20.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:20.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:20.524][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2025-04-12 16:04:20.527][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:20.529][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:20.530][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2025-04-12 16:04:20.819][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2025-04-12 16:04:21.100][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:21.102][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2025-04-12 16:04:21.106][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2025-04-12 16:04:21.110][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2025-04-12 16:04:21.113][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:21.115][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:21.116][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:21.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:21.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:21.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:21.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:21.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:21.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:21.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:21.133][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.142][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:21.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:21.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.152][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:21.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:21.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:21.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:21.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:21.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:21.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:21.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:21.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.181][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:21.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:21.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.186][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:21.187][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.190][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:21.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:21.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.205][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:21.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:21.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:21.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.214][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:21.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:21.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:21.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.224][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:21.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:21.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:21.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:21.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:21.286][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-04-12 16:04:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:21.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:21.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:21.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:21.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:21.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:21.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:21.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:21.316][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-04-12 16:04:21.318][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:21.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2025-04-12 16:04:21.321][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:21.322][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:21.324][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:21.325][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:21.326][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:21.327][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:21.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:21.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:21.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:21.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:21.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:21.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:21.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:21.344][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2025-04-12 16:04:21.347][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:21.348][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:21.349][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2025-04-12 16:04:21.632][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2025-04-12 16:04:21.913][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:21.915][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2025-04-12 16:04:21.920][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2025-04-12 16:04:21.923][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2025-04-12 16:04:21.925][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:21.926][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:21.928][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:21.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:21.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:21.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:21.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:21.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:21.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:21.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:21.945][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:21.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:21.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.954][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:21.955][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:21.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:21.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:21.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.964][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:21.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:21.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:21.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:21.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:21.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:21.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:21.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:21.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.983][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:21.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:21.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:21.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:21.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:21.998][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.000][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:22.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.005][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:22.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:22.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:22.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:22.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:22.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.028][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:22.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:22.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:22.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:22.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:22.039][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:22.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:22.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:22.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:22.095][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-04-12 16:04:22.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:22.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:22.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:22.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:22.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:22.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:22.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:22.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:22.123][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-04-12 16:04:22.124][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:22.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2025-04-12 16:04:22.128][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:22.129][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:22.130][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:22.132][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:22.133][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:22.134][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:22.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:22.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:22.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:22.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:22.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:22.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:22.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:22.150][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2025-04-12 16:04:22.153][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:22.154][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:22.156][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2025-04-12 16:04:22.449][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2025-04-12 16:04:22.744][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:22.746][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2025-04-12 16:04:22.751][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2025-04-12 16:04:22.754][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2025-04-12 16:04:22.756][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:22.757][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:22.759][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:22.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:22.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:22.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:22.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:22.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:22.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:22.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:22.776][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.786][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:22.787][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:22.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:22.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.795][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:22.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:22.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:22.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:22.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:22.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:22.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:22.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:22.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:22.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:22.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:22.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.830][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:22.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:22.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.849][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:22.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:22.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:22.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:22.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.868][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:22.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:22.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:22.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:22.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.878][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:22.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:22.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:22.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:22.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:22.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:22.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:22.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:22.935][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-04-12 16:04:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:22.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:22.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:22.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:22.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:22.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:22.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:22.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:22.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:22.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:22.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:22.964][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-04-12 16:04:22.965][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:22.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2025-04-12 16:04:22.968][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:22.970][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:22.971][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:22.972][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:22.974][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:22.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:22.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:22.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:22.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:22.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:22.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:22.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:22.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:22.994][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2025-04-12 16:04:22.997][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:22.998][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:23.000][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2025-04-12 16:04:23.281][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2025-04-12 16:04:23.563][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:23.565][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2025-04-12 16:04:23.570][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2025-04-12 16:04:23.573][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2025-04-12 16:04:23.575][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:23.577][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:23.578][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:23.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:23.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:23.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:23.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:23.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:23.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:23.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:23.595][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.604][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:23.606][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:23.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:23.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:23.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:23.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:23.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:23.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:23.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:23.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:23.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:23.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.643][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:23.644][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:23.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.648][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:23.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.653][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:23.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.667][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:23.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:23.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:23.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.677][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:23.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:23.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:23.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:23.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:23.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:23.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:23.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:23.743][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-04-12 16:04:23.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:23.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:23.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:23.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:23.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:23.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:23.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:23.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:23.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:23.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:23.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:23.771][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-04-12 16:04:23.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:23.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2025-04-12 16:04:23.776][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:23.777][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:23.779][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:23.780][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:23.781][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:23.782][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:23.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:23.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:23.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:23.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:23.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:23.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:23.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:23.799][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2025-04-12 16:04:23.802][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:23.803][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:23.804][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2025-04-12 16:04:24.090][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2025-04-12 16:04:24.386][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:24.389][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2025-04-12 16:04:24.393][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2025-04-12 16:04:24.397][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2025-04-12 16:04:24.399][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:24.400][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:24.402][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:24.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:24.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:24.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:24.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:24.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:24.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:24.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:24.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.437][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:24.438][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:24.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.442][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:24.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:24.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.447][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:24.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:24.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:24.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:24.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:24.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:24.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:24.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:24.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.481][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:24.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.486][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:24.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:24.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.500][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:24.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:24.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:24.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.510][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:24.511][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:24.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:24.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.520][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:24.521][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:24.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:24.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:24.576][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-04-12 16:04:24.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:24.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:24.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:24.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:24.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:24.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:24.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:24.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:24.605][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-04-12 16:04:24.606][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:24.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2025-04-12 16:04:24.610][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:24.611][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:24.612][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:24.613][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:24.615][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:24.616][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:24.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:24.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:24.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:24.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:24.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:24.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:24.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:24.632][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2025-04-12 16:04:24.635][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:24.636][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:24.638][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2025-04-12 16:04:24.923][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2025-04-12 16:04:25.202][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:25.205][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2025-04-12 16:04:25.211][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2025-04-12 16:04:25.214][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2025-04-12 16:04:25.216][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:25.218][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:25.219][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:25.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:25.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:25.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:25.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:25.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:25.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:25.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:25.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.245][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:25.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:25.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.250][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:25.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:25.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:25.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:25.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:25.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:25.266][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:25.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:25.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:25.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:25.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:25.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:25.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:25.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:25.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:25.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.289][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:25.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:25.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:25.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:25.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:25.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:25.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.319][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:25.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:25.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:25.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:25.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:25.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:25.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:25.386][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-04-12 16:04:25.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:25.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:25.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:25.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:25.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:25.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:25.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:25.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:25.423][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-04-12 16:04:25.424][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:25.428][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2025-04-12 16:04:25.430][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:25.432][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:25.434][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:25.435][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:25.437][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:25.438][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:25.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:25.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:25.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:25.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:25.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:25.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:25.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:25.454][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2025-04-12 16:04:25.458][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:25.459][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:25.460][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2025-04-12 16:04:25.740][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2025-04-12 16:04:26.024][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:26.027][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2025-04-12 16:04:26.031][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2025-04-12 16:04:26.034][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2025-04-12 16:04:26.037][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:26.038][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:26.039][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:26.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:26.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:26.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:26.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:26.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:26.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:26.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:26.056][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.057][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.066][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:26.067][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:26.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.070][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.075][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:26.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:26.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:26.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:26.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:26.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:26.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:26.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:26.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:26.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.105][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:26.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:26.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.109][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:26.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:26.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:26.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.129][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:26.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:26.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:26.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:26.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:26.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:26.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:26.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:26.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:26.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:26.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:26.204][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-04-12 16:04:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:26.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:26.224][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:26.225][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:26.227][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:26.511][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:26.791][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:26.794][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2025-04-12 16:04:26.798][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2025-04-12 16:04:26.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:26.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:26.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:26.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:26.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:26.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:26.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:26.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:26.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:26.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:26.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:26.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:26.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:26.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:26.847][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-04-12 16:04:26.848][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:26.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2025-04-12 16:04:26.852][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:26.853][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:26.854][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:26.856][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:26.857][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:26.858][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:26.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:26.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:26.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:26.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:26.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:26.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:26.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:26.875][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2025-04-12 16:04:26.878][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:26.879][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:26.881][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2025-04-12 16:04:27.166][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2025-04-12 16:04:27.455][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:27.457][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2025-04-12 16:04:27.462][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2025-04-12 16:04:27.466][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2025-04-12 16:04:27.468][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:27.469][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:27.471][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:27.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:27.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:27.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:27.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:27.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:27.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:27.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:27.488][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.498][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:27.499][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:27.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:27.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.508][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:27.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:27.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:27.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:27.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:27.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:27.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:27.538][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:27.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.542][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:27.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.558][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:27.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:27.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.572][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:27.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:27.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:27.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:27.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.582][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:27.584][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:27.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.587][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:27.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:27.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.592][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:27.593][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:27.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:27.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:27.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:27.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:27.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:27.649][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-04-12 16:04:27.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:27.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:27.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:27.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:27.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:27.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:27.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:27.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:27.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:27.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:27.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:27.678][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-04-12 16:04:27.680][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:27.681][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2025-04-12 16:04:27.683][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:27.685][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:27.686][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:27.687][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:27.688][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:27.689][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:27.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:27.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:27.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:27.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:27.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:27.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:27.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:27.706][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2025-04-12 16:04:27.709][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:27.711][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:27.712][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2025-04-12 16:04:27.994][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2025-04-12 16:04:28.275][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:28.278][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2025-04-12 16:04:28.282][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2025-04-12 16:04:28.286][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2025-04-12 16:04:28.288][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:28.290][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:28.291][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:28.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.308][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.309][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.317][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:28.319][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:28.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:28.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:28.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.327][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:28.328][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:28.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:28.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:28.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:28.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:28.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.346][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:28.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:28.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:28.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:28.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.361][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:28.362][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.366][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:28.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.380][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:28.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:28.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:28.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:28.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.390][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:28.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:28.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:28.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:28.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:28.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:28.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:28.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:28.457][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-04-12 16:04:28.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:28.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:28.473][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:28.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.499][private$selectFields]
biodb.TRACE[2025-04-12 16:04:28.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:28.502][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:28.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.520][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:28.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:04:28.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.570][private$selectFields]
biodb.TRACE[2025-04-12 16:04:28.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:28.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:28.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.585][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:28.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:04:28.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.631][private$selectFields]
biodb.TRACE[2025-04-12 16:04:28.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:28.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:28.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.645][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.651][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:04:28.667][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:28.668][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:28.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:28.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:28.792][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:28.796][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:28.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:04:28.799][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:28.812][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:04:28.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:28.819][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:28.820][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:04:28.822][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:28.835][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:04:28.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:28.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:28.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:28.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:28.923][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:28.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:28.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:28.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:28.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:28.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:28.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.954][private$selectFields]
biodb.TRACE[2025-04-12 16:04:28.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:28.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:28.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.969][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:28.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.975][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:28.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:28.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:28.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:04:28.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:28.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:28.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:29.044][private$selectFields]
biodb.TRACE[2025-04-12 16:04:29.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:29.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:29.047][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:29.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.058][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:29.066][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:29.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:29.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:29.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:29.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:29.113][private$selectFields]
biodb.TRACE[2025-04-12 16:04:29.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:29.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:29.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:29.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:29.128][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:29.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.134][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:29.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:29.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:04:29.151][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:29.152][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:29.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:29.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:29.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:29.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:29.173][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:29.174][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:29.176][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:29.470][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:29.756][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:29.758][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2025-04-12 16:04:29.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2025-04-12 16:04:29.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:29.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:29.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:29.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:29.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:29.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:29.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:29.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:29.809][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-04-12 16:04:29.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:29.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2025-04-12 16:04:29.813][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:29.815][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:29.816][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:29.817][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:29.818][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:29.820][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:29.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:29.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:29.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:29.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:29.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:29.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:29.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:29.836][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2025-04-12 16:04:29.839][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:29.840][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:29.842][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2025-04-12 16:04:30.138][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2025-04-12 16:04:30.437][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:30.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2025-04-12 16:04:30.444][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2025-04-12 16:04:30.447][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2025-04-12 16:04:30.449][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:30.451][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:30.452][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:30.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:30.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:30.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:30.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:30.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:30.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:30.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:30.469][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.479][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:30.480][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:30.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:30.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.488][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:30.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:30.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:30.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:30.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:30.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:30.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.517][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:30.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:30.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:30.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:30.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:30.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.532][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:30.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:30.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.541][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.551][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:30.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:30.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.561][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:30.562][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:30.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:30.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:30.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:30.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:30.627][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-04-12 16:04:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:30.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:30.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:30.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:30.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:30.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:30.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:30.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:30.656][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-04-12 16:04:30.657][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:30.659][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2025-04-12 16:04:30.661][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:30.662][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:30.663][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:30.665][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:30.666][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:30.667][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:30.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:30.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:30.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:30.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:30.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:30.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:30.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:30.683][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2025-04-12 16:04:30.686][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:30.687][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:30.689][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2025-04-12 16:04:30.982][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2025-04-12 16:04:31.272][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:31.274][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2025-04-12 16:04:31.279][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2025-04-12 16:04:31.282][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2025-04-12 16:04:31.284][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:31.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:31.287][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:31.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:31.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:31.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:31.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:31.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:31.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:31.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:31.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:31.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:31.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:31.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:31.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:31.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:31.334][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:31.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:31.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:31.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:31.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:31.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.357][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:31.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:31.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:31.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:31.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.368][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.376][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:31.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:31.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:31.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:31.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.386][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:31.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:31.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:31.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:31.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:31.452][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-04-12 16:04:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:31.468][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:31.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:31.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:31.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:31.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:31.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:31.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:31.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:31.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.494][private$selectFields]
biodb.TRACE[2025-04-12 16:04:31.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:31.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:31.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.516][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:31.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:31.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:31.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:31.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:31.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:31.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:31.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.563][private$selectFields]
biodb.TRACE[2025-04-12 16:04:31.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:31.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:31.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.584][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:04:31.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:31.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:31.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:31.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:31.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:31.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:31.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:31.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.625][private$selectFields]
biodb.TRACE[2025-04-12 16:04:31.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:31.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:31.628][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.639][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:31.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.642][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.645][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:31.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:04:31.662][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:31.663][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:31.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:31.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:31.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:31.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:31.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:31.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:31.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:31.680][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:31.684][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:31.685][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:31.687][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:31.982][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:32.279][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:32.282][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2025-04-12 16:04:32.287][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2025-04-12 16:04:32.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:32.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:32.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:32.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:32.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:32.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:32.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:32.305][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-04-12 16:04:32.306][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:32.308][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2025-04-12 16:04:32.310][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:32.311][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:32.312][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:32.314][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:32.315][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:32.316][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:32.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:32.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:32.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:32.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:32.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:32.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:32.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:32.332][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2025-04-12 16:04:32.335][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:32.337][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:32.338][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2025-04-12 16:04:32.625][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2025-04-12 16:04:32.925][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:32.928][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2025-04-12 16:04:32.932][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2025-04-12 16:04:32.936][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2025-04-12 16:04:32.938][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:32.939][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:32.941][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:32.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:32.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:32.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:32.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:32.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:32.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:32.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:32.958][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.959][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.967][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:32.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:32.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:32.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:32.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:32.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:32.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:32.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:32.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:32.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:32.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:32.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:32.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:33.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:33.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:33.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.017][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:33.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:33.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:33.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:33.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.036][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:33.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:33.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:33.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:33.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.046][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:33.047][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:33.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:33.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:33.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.056][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:33.057][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:33.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.138][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-04-12 16:04:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:33.168][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-04-12 16:04:33.169][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:33.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2025-04-12 16:04:33.172][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:33.174][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:33.175][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:33.176][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:33.177][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:33.179][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:33.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:33.196][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2025-04-12 16:04:33.199][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:33.200][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:33.202][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2025-04-12 16:04:33.502][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2025-04-12 16:04:33.793][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:33.796][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2025-04-12 16:04:33.800][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2025-04-12 16:04:33.804][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2025-04-12 16:04:33.806][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:33.808][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:33.809][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:33.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:33.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:33.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:33.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:33.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:33.827][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.837][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:33.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:33.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.846][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:33.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:33.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:33.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:33.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:33.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:33.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.866][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.867][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:33.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.876][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:33.877][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:33.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.881][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:33.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:33.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:33.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.901][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:33.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:33.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.911][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:33.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:33.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:33.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:33.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.920][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:33.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:33.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:33.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.978][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-04-12 16:04:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:33.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:33.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:33.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:33.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:34.008][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-04-12 16:04:34.009][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:34.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2025-04-12 16:04:34.013][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:34.014][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:34.016][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:34.017][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:34.018][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:34.019][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:34.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:34.036][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2025-04-12 16:04:34.039][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:34.040][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:34.042][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2025-04-12 16:04:34.326][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2025-04-12 16:04:34.615][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:34.618][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2025-04-12 16:04:34.622][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2025-04-12 16:04:34.625][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2025-04-12 16:04:34.628][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:34.629][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:34.631][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:34.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:34.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:34.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.668][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:34.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:34.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:34.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:34.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:34.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:34.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:34.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:34.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:34.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.702][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:34.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:34.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.707][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:34.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:34.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.732][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:34.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:34.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:34.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:34.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.742][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:34.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:34.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.751][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:34.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:34.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:34.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:34.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:34.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.808][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-04-12 16:04:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:34.824][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:34.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.849][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.864][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:04:34.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.911][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.914][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.932][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.947][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:04:34.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:34.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:34.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:34.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:34.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:34.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:34.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:34.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.973][private$selectFields]
biodb.TRACE[2025-04-12 16:04:34.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:34.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:34.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:34.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:34.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:34.995][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:34.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-12 16:04:35.014][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:35.015][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:35.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.037][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:04:35.048][biodb::testThat]
biodb.INFO [2025-04-12 16:04:35.049][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-04-12 16:04:35.050][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:04:35.051][biodb::testThat]
biodb.TRACE[2025-04-12 16:04:35.055][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.060][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:35.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:35.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:35.148][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:35.152][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:35.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:04:35.160][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:35.163][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:04:35.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:35.198][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:35.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:04:35.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:35.203][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:04:35.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.261][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:35.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.287][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.289][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.307][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:04:35.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.348][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.364][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.369][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:35.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.410][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.411][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.425][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.431][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:04:35.448][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:35.449][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:35.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:35.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:35.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:35.472][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:04:35.473][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:35.476][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:04:35.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:35.538][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:35.540][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:04:35.542][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:35.544][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:04:35.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.640][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:35.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.665][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.666][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.667][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.680][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.686][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.701][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:35.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.726][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.730][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.741][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.747][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:04:35.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.789][private$selectFields]
biodb.TRACE[2025-04-12 16:04:35.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:35.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:35.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.804][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:35.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.809][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:35.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:35.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:04:35.826][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:35.827][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:35.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:35.845][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:35.848][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:35.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:04:35.851][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:35.854][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:04:35.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:35.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:35.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:35.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:35.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:35.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:35.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:35.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:35.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:35.942][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:35.945][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:35.947][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:35.949][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:36.238][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:36.625][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:36.628][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2025-04-12 16:04:36.634][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2025-04-12 16:04:36.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:36.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:36.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:36.682][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-04-12 16:04:36.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:36.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2025-04-12 16:04:36.687][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:36.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:36.689][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:36.691][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:36.692][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:36.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:36.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:36.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:36.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:36.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:36.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:36.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:36.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:36.717][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2025-04-12 16:04:36.720][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:36.722][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:36.723][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2025-04-12 16:04:37.020][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2025-04-12 16:04:37.326][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:37.328][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2025-04-12 16:04:37.333][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2025-04-12 16:04:37.336][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2025-04-12 16:04:37.338][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:37.340][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:37.341][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:37.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:37.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.368][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.370][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.373][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.378][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:37.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.417][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:37.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.422][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.437][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:37.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.447][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:37.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.456][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:37.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:37.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:37.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:37.514][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-04-12 16:04:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:37.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:37.543][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-04-12 16:04:37.544][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:37.546][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2025-04-12 16:04:37.547][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:37.549][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:37.550][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:37.551][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:37.552][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:37.554][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:37.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:37.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:37.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:37.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:37.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:37.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:37.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:37.570][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2025-04-12 16:04:37.573][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:37.575][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:37.576][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2025-04-12 16:04:37.860][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2025-04-12 16:04:38.152][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:38.155][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2025-04-12 16:04:38.159][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2025-04-12 16:04:38.163][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2025-04-12 16:04:38.165][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:38.167][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:38.168][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:38.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:38.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:38.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:38.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:38.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:38.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:38.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:38.185][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.195][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:38.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:38.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:38.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.235][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.236][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:38.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.245][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:38.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:38.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.265][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.275][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:38.276][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.285][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.286][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:38.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:38.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:38.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:38.352][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-04-12 16:04:38.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:38.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:38.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:38.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:38.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:38.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:38.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:38.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:38.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:38.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:38.380][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-04-12 16:04:38.382][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:38.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2025-04-12 16:04:38.385][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:38.386][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:38.388][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:38.389][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:38.390][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:38.391][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:38.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:38.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:38.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:38.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:38.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:38.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:38.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:38.408][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2025-04-12 16:04:38.411][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:38.412][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:38.414][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2025-04-12 16:04:38.709][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2025-04-12 16:04:39.010][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:39.013][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2025-04-12 16:04:39.017][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2025-04-12 16:04:39.021][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2025-04-12 16:04:39.023][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:39.024][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:39.026][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:39.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.043][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.053][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:39.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:39.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.062][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:39.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.074][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:39.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:39.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.084][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:39.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.092][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.093][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.102][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:39.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.107][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:39.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.122][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:39.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.132][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:39.133][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.136][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:39.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:39.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:39.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:39.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.199][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-04-12 16:04:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.214][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:39.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.241][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.261][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.277][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:04:39.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.303][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-04-12 16:04:39.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.374][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.389][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.395][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:39.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-04-12 16:04:39.411][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:39.413][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:39.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:39.502][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:39.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:04:39.505][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:39.508][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:04:39.511][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:39.515][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:39.516][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:04:39.518][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:39.520][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:04:39.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:39.608][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:39.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.635][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.636][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.650][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.656][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:04:39.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.698][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.713][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.719][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:39.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:39.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.767][private$selectFields]
biodb.TRACE[2025-04-12 16:04:39.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:39.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:39.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.783][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:39.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.789][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:39.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:39.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:39.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:39.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:04:39.806][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:39.807][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:39.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:39.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:39.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:39.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:39.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:39.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:39.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:39.825][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:39.828][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:39.830][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:39.832][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:40.127][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:40.430][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:40.433][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2025-04-12 16:04:40.438][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2025-04-12 16:04:40.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:40.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:40.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:40.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:40.512][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-04-12 16:04:40.514][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:40.515][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2025-04-12 16:04:40.517][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:40.518][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:40.520][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:40.521][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:40.522][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:40.523][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:40.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:40.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:40.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:40.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:40.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:40.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:40.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:40.540][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2025-04-12 16:04:40.543][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:40.544][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:40.546][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2025-04-12 16:04:40.826][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2025-04-12 16:04:41.116][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:41.119][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2025-04-12 16:04:41.123][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2025-04-12 16:04:41.126][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2025-04-12 16:04:41.129][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:41.130][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:41.131][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:41.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.148][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.158][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.159][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.168][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.207][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:41.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.212][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:41.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:41.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.227][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:41.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.246][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:41.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.303][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-04-12 16:04:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.319][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:41.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.345][private$selectFields]
biodb.TRACE[2025-04-12 16:04:41.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:41.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:41.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.376][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:04:41.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.417][private$selectFields]
biodb.TRACE[2025-04-12 16:04:41.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:41.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:41.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.432][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:04:41.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.479][private$selectFields]
biodb.TRACE[2025-04-12 16:04:41.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:41.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:41.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.494][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:41.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.499][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-04-12 16:04:41.516][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:41.517][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:41.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:41.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:41.538][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:41.540][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:04:41.541][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:41.544][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:04:41.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:41.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:41.643][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-04-12 16:04:41.644][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:41.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2025-04-12 16:04:41.648][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:41.649][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:41.650][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:41.652][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:41.653][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:41.654][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:41.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:41.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:41.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:41.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:41.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:41.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:41.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:41.671][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2025-04-12 16:04:41.674][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:41.675][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:41.677][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2025-04-12 16:04:41.972][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2025-04-12 16:04:42.273][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:42.276][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2025-04-12 16:04:42.281][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2025-04-12 16:04:42.285][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2025-04-12 16:04:42.287][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:42.288][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:42.290][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:42.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:42.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.316][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:42.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.326][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:42.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:42.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.354][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.356][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:42.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.359][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:42.361][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:42.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.387][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:42.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.398][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:42.399][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:42.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:42.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.408][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.409][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:42.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:42.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.464][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-04-12 16:04:42.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:42.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:42.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:42.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:42.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:42.493][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-04-12 16:04:42.494][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:42.496][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2025-04-12 16:04:42.498][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:42.499][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:42.500][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:42.502][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:42.503][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:42.504][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:42.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:42.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:42.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:42.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:42.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:42.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:42.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:42.520][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2025-04-12 16:04:42.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:42.525][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:42.526][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2025-04-12 16:04:42.805][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2025-04-12 16:04:43.097][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:43.100][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2025-04-12 16:04:43.104][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2025-04-12 16:04:43.107][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2025-04-12 16:04:43.109][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:43.111][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:43.112][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:43.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:43.129][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.139][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.140][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:43.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:43.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:43.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.211][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:43.213][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:43.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:43.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:43.278][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-04-12 16:04:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:43.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:43.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:43.307][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-04-12 16:04:43.308][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:43.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2025-04-12 16:04:43.311][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:43.313][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:43.314][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:43.315][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:43.316][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:43.317][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:43.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:43.334][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2025-04-12 16:04:43.337][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:43.338][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:43.339][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2025-04-12 16:04:43.623][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2025-04-12 16:04:43.930][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:43.933][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2025-04-12 16:04:43.937][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2025-04-12 16:04:43.941][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2025-04-12 16:04:43.943][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:43.944][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:43.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:43.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:43.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:43.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:43.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:43.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:43.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:43.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:43.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.981][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.983][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:43.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:43.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.991][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:43.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:43.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:43.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.024][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.032][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:44.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.037][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.043][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.051][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.061][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:44.063][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:44.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:44.128][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-04-12 16:04:44.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:44.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:44.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:44.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:44.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:44.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:44.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:44.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:44.157][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-04-12 16:04:44.158][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:44.160][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2025-04-12 16:04:44.162][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:44.163][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:44.164][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:44.165][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:44.167][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:44.168][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:44.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:44.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:44.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:44.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:44.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:44.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:44.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:44.184][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2025-04-12 16:04:44.187][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:44.188][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:44.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2025-04-12 16:04:44.470][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2025-04-12 16:04:44.762][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:44.764][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2025-04-12 16:04:44.769][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2025-04-12 16:04:44.772][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2025-04-12 16:04:44.774][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:44.776][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:44.777][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:44.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:44.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:44.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:44.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:44.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:44.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:44.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:44.794][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.804][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.813][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:44.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:44.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:44.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.848][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:44.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.867][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.877][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:44.878][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.887][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:44.944][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-04-12 16:04:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:44.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:44.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:44.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:44.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:44.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:44.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:44.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:44.982][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-04-12 16:04:44.983][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:44.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2025-04-12 16:04:44.986][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:44.988][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:44.989][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:44.990][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:44.991][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:44.993][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:44.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:44.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:44.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:45.010][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2025-04-12 16:04:45.012][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:45.014][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:45.015][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2025-04-12 16:04:45.298][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2025-04-12 16:04:45.587][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:45.589][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2025-04-12 16:04:45.594][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2025-04-12 16:04:45.598][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2025-04-12 16:04:45.600][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:45.602][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:45.603][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:45.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:45.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.632][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.642][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:45.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:45.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.674][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:45.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.678][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:45.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:45.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:45.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.689][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.690][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.700][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.711][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:45.712][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.721][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:45.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:45.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:45.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:45.784][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-04-12 16:04:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:45.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:45.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:45.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:45.815][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-04-12 16:04:45.816][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:45.818][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2025-04-12 16:04:45.820][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:45.821][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:45.823][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:45.824][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:45.825][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:45.827][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:45.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:45.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:45.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:45.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:45.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:45.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:45.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:45.845][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2025-04-12 16:04:45.848][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:45.849][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:45.851][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2025-04-12 16:04:46.423][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2025-04-12 16:04:46.707][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:46.709][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2025-04-12 16:04:46.714][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2025-04-12 16:04:46.717][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2025-04-12 16:04:46.719][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:46.721][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:46.722][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:46.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:46.739][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.749][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.750][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.753][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.759][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:46.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:46.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:46.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:46.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.794][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:46.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:46.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.814][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:46.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.834][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:46.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:46.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:46.901][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-04-12 16:04:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:46.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:46.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:46.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:46.930][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-04-12 16:04:46.932][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:46.933][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2025-04-12 16:04:46.935][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:46.936][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:46.938][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:46.939][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:46.940][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:46.941][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:46.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:46.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:46.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:46.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:46.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:46.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:46.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:46.958][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2025-04-12 16:04:46.961][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:46.963][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:46.964][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2025-04-12 16:04:47.257][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2025-04-12 16:04:47.542][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:47.545][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2025-04-12 16:04:47.550][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2025-04-12 16:04:47.554][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2025-04-12 16:04:47.556][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:47.557][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:47.559][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:47.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.586][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:47.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:47.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.597][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:47.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.632][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:47.634][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.637][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:47.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:47.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:47.665][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:47.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:47.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.675][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:47.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:47.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:47.734][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-04-12 16:04:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:47.750][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:47.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.778][private$selectFields]
biodb.TRACE[2025-04-12 16:04:47.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:47.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:47.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.794][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.800][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:04:47.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.852][private$selectFields]
biodb.TRACE[2025-04-12 16:04:47.853][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:47.854][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:47.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.868][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.874][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:47.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-04-12 16:04:47.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:47.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:47.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:47.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:47.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:47.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:47.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:47.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.916][private$selectFields]
biodb.TRACE[2025-04-12 16:04:47.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:47.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:47.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.932][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:47.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.938][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:47.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-04-12 16:04:47.956][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:47.957][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:47.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:04:47.988][biodb::testThat]
biodb.INFO [2025-04-12 16:04:47.990][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-04-12 16:04:47.991][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:04:47.992][biodb::testThat]
biodb.TRACE[2025-04-12 16:04:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:47.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.003][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.010][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:48.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:48.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:48.104][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:48.108][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:48.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:04:48.111][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:48.113][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:04:48.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.145][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:48.148][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:48.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:04:48.151][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:48.154][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:04:48.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.212][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:48.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.238][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.240][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.253][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.259][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:04:48.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.308][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.323][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:48.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.369][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.384][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.390][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:48.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:04:48.407][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:48.408][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:48.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:48.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:48.429][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:48.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:04:48.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:48.434][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:04:48.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:48.497][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:48.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:04:48.500][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:48.503][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:04:48.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.590][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:48.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.616][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.631][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.637][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:48.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.678][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.679][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.681][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.693][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.699][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.715][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:04:48.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.747][private$selectFields]
biodb.TRACE[2025-04-12 16:04:48.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:48.749][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:48.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.762][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:48.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.767][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.783][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:04:48.784][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:48.785][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:48.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:48.803][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:48.806][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:48.808][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:04:48.809][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:48.812][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:04:48.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:48.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:48.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:48.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:48.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:48.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:48.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:48.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:48.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:48.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:49.041][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:49.042][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:04:49.044][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:49.046][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:04:49.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:49.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.133][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:49.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.165][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.166][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.167][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.181][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.187][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:04:49.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.227][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.228][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.229][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.243][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.249][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:49.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:04:49.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.290][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.310][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:49.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:04:49.327][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:49.328][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:49.429][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:49.433][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:49.434][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:04:49.436][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:49.438][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:04:49.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:49.445][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:49.446][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:04:49.448][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:49.450][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:04:49.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.538][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:49.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.564][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.585][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.591][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:04:49.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.632][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.641][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.647][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.653][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.668][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:04:49.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.694][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.696][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.697][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.709][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.714][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:04:49.731][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:49.732][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:49.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:49.750][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:49.753][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:49.755][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:04:49.756][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:49.759][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:04:49.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:49.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:49.845][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:49.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.871][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.886][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.891][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.907][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:04:49.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.933][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.948][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:49.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:04:49.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:49.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:49.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:49.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:49.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:49.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:49.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:49.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:49.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:49.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.995][private$selectFields]
biodb.TRACE[2025-04-12 16:04:49.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:49.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:49.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:49.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.018][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.024][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:04:50.041][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:50.042][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:50.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:50.059][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:50.063][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:04:50.064][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:04:50.066][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:04:50.068][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:04:50.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:50.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:50.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:50.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:50.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:50.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:50.154][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:50.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:50.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.180][private$selectFields]
biodb.TRACE[2025-04-12 16:04:50.181][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:50.182][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:50.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.195][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:04:50.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.241][private$selectFields]
biodb.TRACE[2025-04-12 16:04:50.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:50.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:50.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.262][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:04:50.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.303][private$selectFields]
biodb.TRACE[2025-04-12 16:04:50.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:50.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:50.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:50.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:50.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:50.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-12 16:04:50.341][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:50.342][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:04:50.369][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:04:50.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.389][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:50.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:50.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.395][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:50.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.397][ef$get] fields variable is a list.
biodb.INFO [2025-04-12 16:04:50.399][biodb::testThat]
biodb.INFO [2025-04-12 16:04:50.401][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-04-12 16:04:50.402][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:04:50.403][biodb::testThat]
biodb.TRACE[2025-04-12 16:04:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.412][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:50.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:50.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:04:50.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:04:50.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:50.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:50.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:50.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:50.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:50.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:50.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:50.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:50.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:50.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:50.503][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:50.507][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:50.508][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:50.510][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:50.810][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:51.203][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:51.206][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2025-04-12 16:04:51.211][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2025-04-12 16:04:51.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:51.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:51.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:51.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:51.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:51.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:51.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:51.231][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-04-12 16:04:51.233][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:51.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2025-04-12 16:04:51.236][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:51.237][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:51.239][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:51.240][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:51.241][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:51.242][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:51.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:51.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:51.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:51.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:51.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:51.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:51.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:51.259][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2025-04-12 16:04:51.262][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:51.263][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:51.265][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2025-04-12 16:04:51.552][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2025-04-12 16:04:51.836][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:51.839][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2025-04-12 16:04:51.843][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2025-04-12 16:04:51.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2025-04-12 16:04:51.849][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:51.850][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:51.852][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:51.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:51.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:51.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:51.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:51.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:51.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:51.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:51.869][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:51.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:51.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:51.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:51.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:51.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:51.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:51.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:51.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:51.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:51.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:51.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:51.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:51.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:51.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:51.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:51.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.918][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:51.919][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:51.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.928][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:51.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:51.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:51.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:51.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.948][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:51.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:51.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.951][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:51.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.958][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:51.959][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:51.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:51.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:51.969][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:51.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.971][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:51.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:51.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:51.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:51.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:51.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:51.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:51.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:51.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:51.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:52.027][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-04-12 16:04:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:52.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:52.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:52.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:52.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:52.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:52.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:52.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:52.056][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-04-12 16:04:52.057][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:52.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2025-04-12 16:04:52.061][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:52.062][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:52.064][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:52.065][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:52.066][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:52.067][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:52.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:52.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:52.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:52.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:52.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:52.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:52.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:52.084][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2025-04-12 16:04:52.088][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:52.089][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:52.090][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2025-04-12 16:04:52.380][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2025-04-12 16:04:52.668][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:52.671][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2025-04-12 16:04:52.675][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2025-04-12 16:04:52.679][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2025-04-12 16:04:52.681][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:52.682][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:52.684][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:52.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:52.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:52.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:52.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:52.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:52.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:52.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:52.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.722][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:52.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:52.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:52.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.732][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:52.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:52.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:52.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:52.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:52.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:52.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:52.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.761][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:52.762][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:52.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.770][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:52.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:52.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:52.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:52.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:52.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:52.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.790][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:52.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:52.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.800][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:52.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:52.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:52.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:52.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.810][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:52.811][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:52.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:52.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:52.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:52.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:52.867][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-04-12 16:04:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:52.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:52.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:52.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:52.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:52.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:52.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:52.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:52.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:52.896][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-04-12 16:04:52.897][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:52.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2025-04-12 16:04:52.901][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:52.902][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:52.903][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:52.905][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:52.906][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:52.907][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:52.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:52.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:52.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:52.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:52.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:52.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:52.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:52.924][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2025-04-12 16:04:52.927][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:52.928][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:52.930][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2025-04-12 16:04:53.210][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2025-04-12 16:04:53.508][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:53.510][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2025-04-12 16:04:53.515][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2025-04-12 16:04:53.518][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2025-04-12 16:04:53.520][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:53.522][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:53.523][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:53.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:53.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:53.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:53.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:53.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:53.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:53.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:53.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.550][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:53.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:53.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:53.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:53.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:53.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:53.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:53.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:53.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:53.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:53.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:53.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:53.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:53.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.588][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:53.590][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:53.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.593][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:53.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:53.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:53.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:53.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:53.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:53.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:53.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.613][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:53.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:53.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:53.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.623][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:53.624][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:53.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.632][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:53.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:53.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:53.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:53.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:53.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:53.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:53.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:53.703][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-04-12 16:04:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:53.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:53.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:53.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:53.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:53.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:53.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:53.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:53.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:53.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:53.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:53.732][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-04-12 16:04:53.734][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:53.735][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2025-04-12 16:04:53.737][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:53.738][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:53.740][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:53.741][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:53.742][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:53.743][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:53.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:53.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:53.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:53.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:53.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:53.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:53.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:53.760][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2025-04-12 16:04:53.763][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:53.764][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:53.766][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2025-04-12 16:04:54.057][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2025-04-12 16:04:54.352][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:54.355][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2025-04-12 16:04:54.359][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2025-04-12 16:04:54.362][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2025-04-12 16:04:54.365][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:54.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:54.367][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:54.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:54.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:54.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:54.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:54.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:54.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:54.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:54.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.394][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:54.395][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:54.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:54.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.404][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:54.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:54.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:54.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:54.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:54.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:54.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:54.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:54.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.433][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:54.434][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:54.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.438][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:54.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:54.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:54.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:54.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:54.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:54.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.457][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:54.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:54.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:54.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:54.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.467][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:54.468][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:54.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:54.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.477][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:54.478][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:54.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:54.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:54.534][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-04-12 16:04:54.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:54.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:54.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:54.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:54.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:54.550][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:04:54.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:54.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:54.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:54.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:54.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:54.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:54.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:54.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.576][private$selectFields]
biodb.TRACE[2025-04-12 16:04:54.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:54.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:54.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.591][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.597][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:04:54.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:54.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:54.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:54.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:54.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:54.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:54.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.639][private$selectFields]
biodb.TRACE[2025-04-12 16:04:54.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:54.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:54.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.654][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.656][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.660][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.676][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-12 16:04:54.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:54.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:54.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:54.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:54.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:54.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:54.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.710][private$selectFields]
biodb.TRACE[2025-04-12 16:04:54.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:04:54.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:04:54.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.726][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:04:54.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:04:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:54.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-12 16:04:54.749][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:04:54.750][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:04:54.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:54.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:54.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:54.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:54.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:54.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:54.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:54.768][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:04:54.771][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:54.773][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:54.775][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:04:55.074][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:04:55.388][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:55.391][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2025-04-12 16:04:55.396][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2025-04-12 16:04:55.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:55.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:55.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:55.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:55.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:55.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:55.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:55.414][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-04-12 16:04:55.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:55.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2025-04-12 16:04:55.419][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:55.420][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:55.421][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:55.422][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:55.424][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:55.425][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:55.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:55.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:55.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:55.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:55.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:55.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:55.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:55.441][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2025-04-12 16:04:55.444][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:55.445][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:55.447][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2025-04-12 16:04:55.750][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2025-04-12 16:04:56.035][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:56.038][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2025-04-12 16:04:56.043][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2025-04-12 16:04:56.046][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2025-04-12 16:04:56.049][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:56.050][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:56.052][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:56.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:56.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:56.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:56.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:56.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:56.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:56.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:56.069][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.079][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:56.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:56.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:56.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.089][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:56.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:56.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:56.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:56.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:56.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:56.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:56.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:56.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:56.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:56.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:56.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:56.120][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:56.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.124][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:56.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.129][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:56.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:56.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:56.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.143][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:56.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:56.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:56.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:56.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:56.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:56.164][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:56.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:56.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:56.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:56.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:56.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:56.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:56.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:56.220][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-04-12 16:04:56.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:56.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:56.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:56.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:56.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:56.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:56.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:56.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:56.250][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-04-12 16:04:56.251][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:56.253][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2025-04-12 16:04:56.255][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:56.256][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:56.257][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:56.259][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:56.260][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:56.261][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:56.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:56.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:56.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:56.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:56.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:56.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:56.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:56.278][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2025-04-12 16:04:56.281][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:56.283][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:56.284][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2025-04-12 16:04:56.570][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2025-04-12 16:04:56.859][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:56.862][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2025-04-12 16:04:56.866][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2025-04-12 16:04:56.870][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2025-04-12 16:04:56.872][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:56.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:56.875][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:56.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:56.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:56.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:56.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:56.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:56.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:56.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:56.893][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.894][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:56.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.903][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:56.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:56.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.926][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:56.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:56.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:56.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:56.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:56.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:56.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:56.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:56.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:56.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:56.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:56.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:56.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:56.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:56.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.960][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:56.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.965][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:56.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:56.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:56.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:56.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:56.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:56.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.980][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:56.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:56.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:56.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.990][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:56.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:56.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:56.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:56.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:57.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.004][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:57.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:57.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:57.068][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-04-12 16:04:57.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:57.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:57.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:57.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:57.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:57.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:57.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:57.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:57.097][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-04-12 16:04:57.098][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:57.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2025-04-12 16:04:57.102][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:57.103][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:57.105][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:57.106][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:57.107][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:57.108][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:57.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:57.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:57.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:57.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:57.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:57.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:57.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:57.125][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2025-04-12 16:04:57.128][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:57.129][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:57.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2025-04-12 16:04:57.415][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2025-04-12 16:04:57.695][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:57.698][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2025-04-12 16:04:57.703][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2025-04-12 16:04:57.706][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2025-04-12 16:04:57.708][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:57.709][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:57.711][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:57.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:57.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:57.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:57.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:57.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:57.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:57.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:57.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.737][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:57.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:57.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:57.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.747][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:57.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:57.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:57.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:57.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:57.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:57.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:57.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:57.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.781][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:57.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:57.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:57.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:57.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.801][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:57.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:57.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:57.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.810][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:57.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:57.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:57.821][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:57.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:57.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:57.877][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-04-12 16:04:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:57.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:57.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:57.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:57.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:57.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:57.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:57.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:57.915][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-04-12 16:04:57.916][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:57.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2025-04-12 16:04:57.920][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:57.921][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:57.923][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:57.924][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:57.925][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:57.926][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:57.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:57.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:57.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:57.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:57.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:57.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:57.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:57.942][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2025-04-12 16:04:57.945][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:57.946][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:57.948][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2025-04-12 16:04:58.233][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2025-04-12 16:04:58.523][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:58.526][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2025-04-12 16:04:58.531][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2025-04-12 16:04:58.534][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2025-04-12 16:04:58.536][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:58.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:58.539][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:58.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:58.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:58.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:58.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:58.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:58.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:58.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:58.556][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.566][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:58.567][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:58.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.575][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:58.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:58.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:58.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:58.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:58.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:58.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:58.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:58.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:58.606][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:58.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.609][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:58.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:58.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.614][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:58.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:58.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:58.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:58.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.629][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:58.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:58.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:58.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.638][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:58.640][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:58.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.643][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:58.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:58.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.648][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:58.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:58.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:58.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:58.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:58.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:58.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:58.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:58.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:58.706][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-04-12 16:04:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:58.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:58.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:58.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:58.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:58.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:58.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:58.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:58.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:58.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:58.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:58.735][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-04-12 16:04:58.736][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:58.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2025-04-12 16:04:58.740][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:58.741][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:58.742][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:58.743][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:58.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:58.746][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:58.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:58.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:58.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:58.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:58.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:58.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:58.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:58.762][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2025-04-12 16:04:58.766][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:58.767][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:58.768][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2025-04-12 16:04:59.050][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2025-04-12 16:04:59.347][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:04:59.350][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2025-04-12 16:04:59.354][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2025-04-12 16:04:59.357][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2025-04-12 16:04:59.360][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:04:59.361][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:04:59.362][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:04:59.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:59.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:59.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:59.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:59.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:59.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:59.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:04:59.379][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.389][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:59.390][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:59.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:04:59.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:04:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.399][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:59.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:59.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:04:59.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:04:59.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:59.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:59.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:04:59.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:04:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:59.420][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:59.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:04:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:04:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:59.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:59.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:59.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:04:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.438][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:59.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:59.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:04:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:59.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:59.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:04:59.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.457][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:59.458][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:59.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:04:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:04:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.467][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:59.468][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:59.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:04:59.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:04:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:59.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:59.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:04:59.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:04:59.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:59.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:59.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:04:59.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:04:59.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:04:59.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:04:59.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:59.545][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-04-12 16:04:59.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:59.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:59.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:59.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:59.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:04:59.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:59.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:04:59.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:04:59.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:04:59.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:59.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:59.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:59.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:59.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:59.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:59.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:59.574][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-04-12 16:04:59.575][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:04:59.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2025-04-12 16:04:59.579][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:04:59.580][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:04:59.581][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:04:59.582][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:04:59.584][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:04:59.585][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:04:59.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:04:59.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:04:59.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:04:59.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:04:59.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:04:59.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:04:59.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:04:59.601][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2025-04-12 16:04:59.604][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:04:59.605][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:04:59.607][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2025-04-12 16:04:59.890][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2025-04-12 16:05:00.176][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:00.178][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2025-04-12 16:05:00.183][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2025-04-12 16:05:00.186][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2025-04-12 16:05:00.188][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:00.189][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:00.191][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:00.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:00.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:00.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:00.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:00.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:00.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:00.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:00.207][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.209][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.217][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:00.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:00.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.222][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:00.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:00.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.227][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:00.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:00.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:00.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:00.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:00.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:00.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:00.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:00.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:00.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:00.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:00.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:00.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:00.257][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:00.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.261][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:00.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:00.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:00.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:00.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:00.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:00.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:00.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:00.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:00.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:00.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:00.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:00.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.290][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:00.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:00.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:00.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:00.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:00.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:00.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:00.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:00.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:00.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:00.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:00.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:00.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:00.357][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-04-12 16:05:00.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:00.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:00.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:00.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:00.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:00.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:00.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:00.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:00.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:00.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:00.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:00.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:00.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:00.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:00.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:00.386][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-04-12 16:05:00.388][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:00.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2025-04-12 16:05:00.391][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:00.392][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:00.394][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:00.395][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:00.396][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:00.397][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:00.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:00.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:00.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:00.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:00.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:00.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:00.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:00.414][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2025-04-12 16:05:00.417][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:00.418][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:00.420][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2025-04-12 16:05:00.701][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2025-04-12 16:05:00.994][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:00.997][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2025-04-12 16:05:01.001][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2025-04-12 16:05:01.004][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2025-04-12 16:05:01.006][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:01.008][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:01.009][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:01.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:01.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:01.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:01.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:01.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:01.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:01.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:01.026][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.036][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:01.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:01.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.056][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:01.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:01.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:01.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:01.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:01.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:01.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:01.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:01.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:01.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:01.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:01.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:01.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:01.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:01.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.095][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:01.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:01.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.100][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:01.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.105][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:01.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:01.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:01.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:01.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.115][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:01.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:01.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:01.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:01.126][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:01.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:01.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:01.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:01.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:01.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:01.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:01.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:01.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:01.191][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-04-12 16:05:01.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:01.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:01.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:01.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:01.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:01.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:01.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:01.207][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:01.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:01.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:01.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:01.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:01.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:01.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:01.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:01.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.233][private$selectFields]
biodb.TRACE[2025-04-12 16:05:01.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:01.235][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:01.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.248][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.254][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:01.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-12 16:05:01.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:01.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:01.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:01.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:01.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:01.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:01.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:01.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.295][private$selectFields]
biodb.TRACE[2025-04-12 16:05:01.296][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:01.297][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:01.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.310][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.316][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-12 16:05:01.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:01.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:01.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:01.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:01.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:01.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:01.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:01.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.357][private$selectFields]
biodb.TRACE[2025-04-12 16:05:01.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:01.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:01.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.371][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.372][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:01.373][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.378][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:01.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:01.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:01.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:01.394][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-12 16:05:01.395][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:01.396][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:01.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:01.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:01.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:01.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:01.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:01.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:01.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:01.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:01.417][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:01.418][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:01.420][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:01.704][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:01.987][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:01.990][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2025-04-12 16:05:01.995][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2025-04-12 16:05:01.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:02.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:02.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:02.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:02.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:02.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:02.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:02.013][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-04-12 16:05:02.015][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:02.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2025-04-12 16:05:02.018][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:02.020][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:02.021][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:02.022][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:02.023][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:02.031][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:02.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:02.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:02.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:02.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:02.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:02.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:02.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:02.051][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2025-04-12 16:05:02.054][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:02.056][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:02.057][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2025-04-12 16:05:02.339][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2025-04-12 16:05:02.621][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:02.623][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2025-04-12 16:05:02.628][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2025-04-12 16:05:02.631][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2025-04-12 16:05:02.633][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:02.635][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:02.636][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:02.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:02.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:02.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:02.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:02.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:02.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:02.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:02.653][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.663][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:02.664][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:02.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:02.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.673][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:02.674][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:02.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:02.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:02.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:02.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:02.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:02.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:02.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:02.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:02.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.702][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:02.703][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:02.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.707][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:02.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:02.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.712][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:02.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:02.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:02.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:02.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:02.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:02.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.726][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:02.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:02.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:02.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.736][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:02.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:02.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:02.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:02.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.746][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:02.747][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:02.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:02.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:02.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:02.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:02.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:02.803][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-04-12 16:05:02.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:02.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:02.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:02.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:02.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:02.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:02.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:02.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:02.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:02.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:02.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:02.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:02.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:02.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:02.832][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-04-12 16:05:02.833][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:02.835][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2025-04-12 16:05:02.837][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:02.838][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:02.839][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:02.841][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:02.842][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:02.843][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:02.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:02.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:02.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:02.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:02.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:02.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:02.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:02.860][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2025-04-12 16:05:02.863][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:02.864][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:02.866][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2025-04-12 16:05:03.147][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2025-04-12 16:05:03.427][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:03.430][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2025-04-12 16:05:03.435][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2025-04-12 16:05:03.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2025-04-12 16:05:03.441][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:03.442][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:03.443][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:03.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:03.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:03.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:03.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:03.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:03.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:03.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:03.460][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.470][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:03.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:03.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:03.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:03.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:03.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:03.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:03.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:03.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:03.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:03.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:03.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:03.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:03.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:03.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.514][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:03.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:03.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.519][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:03.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:03.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:03.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:03.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:03.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:03.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.533][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:03.535][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:03.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:03.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:03.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.543][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:03.545][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:03.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.553][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:03.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:03.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:03.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:03.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:03.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:03.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:03.621][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-04-12 16:05:03.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:03.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:03.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:03.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:03.637][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:03.641][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:03.642][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:03.644][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:03.936][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:04.220][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:04.223][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2025-04-12 16:05:04.228][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2025-04-12 16:05:04.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:04.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:04.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:04.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:04.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:04.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:04.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:04.245][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-04-12 16:05:04.247][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:04.248][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2025-04-12 16:05:04.250][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:04.251][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:04.253][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:04.254][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:04.255][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:04.256][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:04.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:04.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:04.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:04.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:04.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:04.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:04.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:04.273][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2025-04-12 16:05:04.276][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:04.277][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:04.279][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2025-04-12 16:05:04.562][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2025-04-12 16:05:04.843][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:04.846][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2025-04-12 16:05:04.850][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2025-04-12 16:05:04.854][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2025-04-12 16:05:04.856][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:04.857][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:04.859][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:04.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:04.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:04.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:04.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:04.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:04.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:04.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:04.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:04.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:04.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:04.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:04.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:04.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.896][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:04.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:04.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:04.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:04.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.905][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:04.907][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:04.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:04.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:04.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:04.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:04.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:04.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:04.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:04.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:04.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:04.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:04.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.934][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:04.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:04.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.939][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.944][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:04.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:04.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:04.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:04.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.954][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:04.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:04.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:04.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.964][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:04.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:04.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:04.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:04.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:04.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:04.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:04.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:04.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:04.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:05.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:05.031][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-04-12 16:05:05.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:05.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:05.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:05.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:05.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:05.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:05.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:05.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:05.060][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-04-12 16:05:05.061][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:05.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2025-04-12 16:05:05.065][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:05.066][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:05.067][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:05.069][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:05.070][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:05.071][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:05.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:05.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:05.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:05.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:05.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:05.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:05.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:05.088][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2025-04-12 16:05:05.091][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:05.092][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:05.094][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2025-04-12 16:05:05.376][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2025-04-12 16:05:05.659][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:05.661][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2025-04-12 16:05:05.666][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2025-04-12 16:05:05.669][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2025-04-12 16:05:05.671][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:05.673][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:05.674][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:05.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:05.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:05.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:05.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:05.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:05.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:05.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:05.691][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.713][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:05.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:05.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.718][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:05.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.723][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:05.724][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:05.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:05.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:05.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.732][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:05.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:05.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:05.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:05.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.742][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:05.743][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:05.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.752][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:05.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:05.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:05.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:05.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.761][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:05.763][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.766][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:05.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:05.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:05.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:05.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:05.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.781][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:05.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:05.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:05.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:05.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.790][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:05.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:05.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:05.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.800][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:05.801][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:05.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:05.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:05.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:05.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:05.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:05.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:05.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:05.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:05.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:05.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:05.857][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-04-12 16:05:05.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:05.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:05.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:05.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:05.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:05.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:05.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:05.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:05.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:05.886][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-04-12 16:05:05.887][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:05.889][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2025-04-12 16:05:05.891][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:05.892][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:05.893][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:05.894][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:05.896][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:05.897][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:05.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:05.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:05.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:05.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:05.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:05.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:05.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:05.914][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2025-04-12 16:05:05.917][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:05.918][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:05.920][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2025-04-12 16:05:06.200][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2025-04-12 16:05:06.486][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:06.489][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2025-04-12 16:05:06.493][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2025-04-12 16:05:06.496][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2025-04-12 16:05:06.498][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:06.500][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:06.501][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:06.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:06.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:06.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:06.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:06.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:06.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:06.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:06.518][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.527][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:06.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:06.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:06.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:06.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:06.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:06.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:06.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:06.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:06.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:06.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:06.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.557][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:06.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:06.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.560][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:06.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:06.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.571][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:06.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:06.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:06.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:06.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:06.592][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:06.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:06.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:06.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.600][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:06.602][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:06.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:06.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:06.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.610][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:06.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:06.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:06.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:06.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:06.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:06.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:06.667][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-04-12 16:05:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:06.692][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:06.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:06.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:06.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:06.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:06.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:06.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:06.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:06.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.718][private$selectFields]
biodb.TRACE[2025-04-12 16:05:06.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:06.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:06.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.728][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.733][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.735][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.739][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-12 16:05:06.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:06.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:06.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:06.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:06.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:06.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:06.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.780][private$selectFields]
biodb.TRACE[2025-04-12 16:05:06.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:06.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:06.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.795][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.801][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-12 16:05:06.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:06.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:06.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:06.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:06.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:06.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:06.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.841][private$selectFields]
biodb.TRACE[2025-04-12 16:05:06.843][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:06.844][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:06.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.857][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:06.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.862][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:06.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-12 16:05:06.879][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:06.880][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:06.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:06.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:06.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:06.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:06.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:06.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:06.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:06.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:06.926][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:06.928][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:05:06.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:06.932][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:05:06.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:06.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:06.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:06.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:06.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:06.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:06.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:06.963][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:06.966][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:06.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:05:06.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:06.972][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:05:06.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:06.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:06.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:06.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:06.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:06.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:06.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:06.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:06.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:06.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.030][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:07.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.057][private$selectFields]
biodb.TRACE[2025-04-12 16:05:07.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:07.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:07.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.072][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.077][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:05:07.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.126][private$selectFields]
biodb.TRACE[2025-04-12 16:05:07.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:07.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:07.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.142][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.147][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:07.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:05:07.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.189][private$selectFields]
biodb.TRACE[2025-04-12 16:05:07.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:07.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:07.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.204][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.210][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:07.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.225][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:05:07.226][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:07.228][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:07.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:07.245][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:07.248][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:07.250][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:05:07.252][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:07.254][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:05:07.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:07.317][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:07.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:05:07.320][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:07.322][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:05:07.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.408][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:07.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.434][private$selectFields]
biodb.TRACE[2025-04-12 16:05:07.435][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:07.436][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:07.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.449][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.455][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:07.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.471][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:05:07.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.496][private$selectFields]
biodb.TRACE[2025-04-12 16:05:07.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:07.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:07.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.511][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.517][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:05:07.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.565][private$selectFields]
biodb.TRACE[2025-04-12 16:05:07.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:07.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:07.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.580][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.586][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:07.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:05:07.603][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:07.604][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:07.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:07.621][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:07.624][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:07.626][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:05:07.627][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:07.630][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:05:07.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.856][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:07.860][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:07.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:05:07.863][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:07.865][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:05:07.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:07.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:07.952][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:07.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:07.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:07.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:07.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:07.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:07.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:07.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:07.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.985][private$selectFields]
biodb.TRACE[2025-04-12 16:05:07.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:07.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:07.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:07.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:07.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:07.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:07.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.003][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.009][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:08.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:05:08.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:08.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:08.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:08.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:08.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:08.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:08.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.051][private$selectFields]
biodb.TRACE[2025-04-12 16:05:08.052][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:08.053][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:08.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.055][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.066][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:08.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:05:08.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:08.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:08.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:08.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:08.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:08.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:08.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:08.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.113][private$selectFields]
biodb.TRACE[2025-04-12 16:05:08.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:08.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:08.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.128][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:08.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.134][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:08.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:05:08.151][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:08.152][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:08.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:08.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:08.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:08.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:08.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:08.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:08.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:08.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:08.198][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:08.199][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:08.201][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:08.489][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:08.785][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:08.788][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2025-04-12 16:05:08.793][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2025-04-12 16:05:08.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:08.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:08.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:08.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:08.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:08.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:08.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:08.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:08.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:08.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:08.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:08.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:08.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:08.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:08.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:08.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:08.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:08.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:08.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:08.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:08.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:08.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:08.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:08.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:08.867][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-04-12 16:05:08.868][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:08.870][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2025-04-12 16:05:08.872][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:08.873][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:08.874][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:08.875][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:08.877][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:08.878][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:08.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:08.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:08.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:08.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:08.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:08.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:08.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:08.895][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2025-04-12 16:05:08.898][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:08.899][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:08.901][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2025-04-12 16:05:09.183][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2025-04-12 16:05:09.481][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:09.484][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2025-04-12 16:05:09.488][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2025-04-12 16:05:09.491][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2025-04-12 16:05:09.494][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:09.495][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:09.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:09.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:09.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:09.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:09.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:09.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:09.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:09.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:09.514][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.524][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:09.525][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:09.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.529][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:09.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.534][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:09.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:09.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:09.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:09.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:09.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:09.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:09.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:09.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:09.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:09.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:09.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:09.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:09.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:09.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:09.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.584][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:09.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.588][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:09.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:09.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:09.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:09.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:09.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.603][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:09.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:09.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:09.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.613][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:09.614][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:09.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:09.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:09.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:09.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:09.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:09.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:09.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:09.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:09.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:09.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:09.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:09.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:09.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:09.679][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-04-12 16:05:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:09.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:09.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:09.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:09.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:09.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:09.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:09.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:09.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:09.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:09.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:09.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:09.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:09.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:09.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:09.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:09.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:09.736][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-04-12 16:05:09.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:09.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2025-04-12 16:05:09.741][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:09.742][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:09.744][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:09.745][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:09.746][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:09.747][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:09.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:09.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:09.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:09.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:09.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:09.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:09.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:09.764][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2025-04-12 16:05:09.767][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:09.768][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:09.770][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2025-04-12 16:05:10.048][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2025-04-12 16:05:10.340][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:10.343][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2025-04-12 16:05:10.348][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2025-04-12 16:05:10.351][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2025-04-12 16:05:10.353][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:10.355][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:10.356][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:10.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:10.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:10.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:10.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:10.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:10.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:10.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:10.373][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.383][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:10.384][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:10.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:10.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.392][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:10.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:10.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:10.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:10.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:10.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:10.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:10.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:10.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.412][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:10.413][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:10.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:10.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:10.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.427][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:10.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:10.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:10.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:10.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:10.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:10.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:10.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.446][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:10.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:10.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:10.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:10.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.456][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:10.457][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:10.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:10.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:10.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.466][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:10.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:10.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:10.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:10.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:10.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:10.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:10.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:10.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:10.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:10.523][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-04-12 16:05:10.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:10.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:10.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:10.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:10.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:10.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:10.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:10.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:10.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:10.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:10.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:10.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:10.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:10.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:10.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:10.562][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-04-12 16:05:10.563][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:10.565][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2025-04-12 16:05:10.567][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:10.568][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:10.569][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:10.571][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:10.572][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:10.573][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:10.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:10.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:10.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:10.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:10.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:10.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:10.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:10.590][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2025-04-12 16:05:10.593][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:10.594][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:10.596][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2025-04-12 16:05:10.879][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2025-04-12 16:05:11.166][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:11.169][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2025-04-12 16:05:11.173][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2025-04-12 16:05:11.177][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2025-04-12 16:05:11.179][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:11.180][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:11.182][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:11.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:11.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:11.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:11.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:11.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:11.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:11.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:11.198][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.208][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:11.209][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:11.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.213][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:11.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.218][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:11.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:11.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:11.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:11.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:11.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:11.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:11.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:11.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:11.238][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:11.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.242][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:11.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:11.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:11.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:11.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:11.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:11.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:11.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:11.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.262][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:11.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:11.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:11.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:11.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.271][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:11.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:11.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:11.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:11.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:11.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:11.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:11.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:11.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:11.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:11.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:11.339][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-04-12 16:05:11.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:11.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:11.354][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:11.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:11.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:11.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:11.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:11.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:11.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:11.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.380][private$selectFields]
biodb.TRACE[2025-04-12 16:05:11.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:11.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:11.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.396][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.401][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:11.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.417][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:05:11.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:11.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:11.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:11.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:11.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:11.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:11.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.443][private$selectFields]
biodb.TRACE[2025-04-12 16:05:11.444][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:11.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:11.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.458][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.464][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:11.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-12 16:05:11.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:11.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:11.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:11.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:11.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:11.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:11.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:11.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.506][private$selectFields]
biodb.TRACE[2025-04-12 16:05:11.507][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:11.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:11.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.521][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:11.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.527][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:11.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:11.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:11.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:11.552][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-12 16:05:11.553][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:11.554][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:11.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:11.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:11.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:11.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:11.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:11.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:11.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:11.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:11.575][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:11.576][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:11.578][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:11.866][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:12.235][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:12.238][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2025-04-12 16:05:12.243][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2025-04-12 16:05:12.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:12.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:12.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:12.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:12.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:12.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:12.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:12.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:12.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:12.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:12.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:12.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:12.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:12.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:12.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:12.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:12.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:12.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:12.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:12.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:12.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:12.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:12.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:12.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:12.333][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:12.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:12.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:12.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:12.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:12.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:12.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:12.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.359][private$selectFields]
biodb.TRACE[2025-04-12 16:05:12.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:12.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:12.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.375][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.380][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:05:12.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:12.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:12.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:12.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:12.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:12.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:12.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:12.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.422][private$selectFields]
biodb.TRACE[2025-04-12 16:05:12.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:12.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:12.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.437][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.443][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:12.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:05:12.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:12.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:12.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:12.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:12.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:12.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:12.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:12.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.484][private$selectFields]
biodb.TRACE[2025-04-12 16:05:12.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:12.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:12.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.499][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:12.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.505][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:12.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:12.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:12.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:12.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:05:12.522][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:12.523][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:12.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:12.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:12.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:12.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:12.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:12.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:12.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:12.541][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:12.545][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:12.546][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:12.548][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:12.830][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:13.117][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:13.120][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2025-04-12 16:05:13.124][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2025-04-12 16:05:13.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:13.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:13.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:13.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:13.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:13.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:13.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:13.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:13.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:13.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:13.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:13.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:13.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:13.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:13.172][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-04-12 16:05:13.173][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:13.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2025-04-12 16:05:13.187][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:13.189][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:13.191][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:13.192][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:13.193][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:13.194][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:13.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:13.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:13.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:13.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:13.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:13.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:13.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:13.211][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2025-04-12 16:05:13.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:13.216][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:13.217][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2025-04-12 16:05:13.498][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2025-04-12 16:05:13.780][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:13.783][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2025-04-12 16:05:13.787][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2025-04-12 16:05:13.791][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2025-04-12 16:05:13.793][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:13.794][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:13.796][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:13.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:13.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:13.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:13.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:13.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:13.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:13.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:13.813][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.822][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:13.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:13.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:13.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.832][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:13.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:13.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:13.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:13.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:13.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.852][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:13.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:13.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:13.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:13.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:13.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.866][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:13.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:13.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:13.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:13.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:13.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.886][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:13.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:13.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.896][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:13.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:13.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.901][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:13.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.905][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:13.907][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:13.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:13.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:13.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:13.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:13.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:13.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:13.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:13.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:13.963][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-04-12 16:05:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:13.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:13.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:13.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:13.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:13.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:13.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:13.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:13.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:13.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:13.993][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-04-12 16:05:13.994][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:13.996][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2025-04-12 16:05:13.998][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:13.999][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:14.001][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:14.003][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:14.005][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:14.006][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:14.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:14.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:14.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:14.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:14.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:14.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:14.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:14.030][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2025-04-12 16:05:14.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:14.034][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:14.036][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2025-04-12 16:05:14.318][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2025-04-12 16:05:14.603][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:14.606][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2025-04-12 16:05:14.610][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2025-04-12 16:05:14.614][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2025-04-12 16:05:14.616][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:14.617][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:14.619][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:14.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:14.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:14.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:14.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:14.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:14.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:14.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:14.636][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.645][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:14.647][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:14.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:14.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:14.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:14.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:14.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:14.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:14.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:14.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:14.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:14.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:14.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:14.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:14.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:14.686][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:14.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.690][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:14.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:14.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.695][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:14.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:14.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:14.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:14.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:14.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:14.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.709][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:14.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:14.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:14.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:14.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.720][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:14.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:14.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:14.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:14.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:14.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:14.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:14.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:14.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:14.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:14.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:14.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:14.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:14.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:14.798][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-04-12 16:05:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:14.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:14.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:14.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:14.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:14.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:14.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:14.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:14.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:14.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:14.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:14.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:14.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:14.828][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-04-12 16:05:14.829][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:14.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2025-04-12 16:05:14.833][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:14.834][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:14.835][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:14.837][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:14.838][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:14.839][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:14.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:14.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:14.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:14.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:14.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:14.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:14.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:14.856][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2025-04-12 16:05:14.859][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:14.860][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:14.862][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2025-04-12 16:05:15.144][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2025-04-12 16:05:15.437][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:15.440][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2025-04-12 16:05:15.445][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2025-04-12 16:05:15.448][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2025-04-12 16:05:15.450][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:15.452][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:15.453][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:15.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:15.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:15.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:15.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:15.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:15.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:15.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:15.474][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.484][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:15.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:15.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:15.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:15.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:15.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:15.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:15.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:15.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:15.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:15.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:15.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:15.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:15.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.525][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:15.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:15.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.530][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:15.531][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.535][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:15.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:15.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:15.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:15.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:15.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.550][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:15.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:15.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:15.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.560][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:15.561][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:15.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:15.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:15.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:15.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:15.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:15.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:15.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:15.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:15.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:15.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:15.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:15.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:15.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:15.629][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-04-12 16:05:15.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:15.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:15.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:15.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:15.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:15.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:15.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:15.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:15.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:15.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:15.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:15.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:15.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:15.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:15.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:15.687][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-04-12 16:05:15.688][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:15.690][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2025-04-12 16:05:15.691][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:15.693][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:15.694][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:15.695][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:15.696][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:15.697][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:15.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:15.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:15.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:15.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:15.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:15.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:15.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:15.714][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2025-04-12 16:05:15.717][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:15.719][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:15.720][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2025-04-12 16:05:16.000][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2025-04-12 16:05:16.300][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:16.303][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2025-04-12 16:05:16.307][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2025-04-12 16:05:16.311][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2025-04-12 16:05:16.313][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:16.315][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:16.316][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:16.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:16.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:16.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:16.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:16.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:16.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:16.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:16.345][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.355][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:16.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:16.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:16.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:16.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.364][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:16.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:16.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:16.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:16.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:16.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:16.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:16.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.384][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:16.385][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:16.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:16.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:16.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:16.395][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:16.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:16.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:16.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.403][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:16.405][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:16.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.408][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:16.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:16.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.413][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:16.414][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:16.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:16.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:16.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.423][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:16.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:16.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.426][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:16.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.433][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:16.434][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:16.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:16.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:16.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:16.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:16.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:16.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:16.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:16.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:16.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:16.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:16.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:16.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:16.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:16.500][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-04-12 16:05:16.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:16.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:16.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:16.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:16.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:16.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:16.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:16.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:16.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:16.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:16.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:16.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:16.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:16.530][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-04-12 16:05:16.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:16.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2025-04-12 16:05:16.534][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:16.536][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:16.537][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:16.538][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:16.539][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:16.540][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:16.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:16.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:16.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:16.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:16.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:16.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:16.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:16.557][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2025-04-12 16:05:16.560][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:16.561][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:16.563][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2025-04-12 16:05:16.852][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2025-04-12 16:05:17.141][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:17.144][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2025-04-12 16:05:17.148][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2025-04-12 16:05:17.152][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2025-04-12 16:05:17.154][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:17.156][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:17.158][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:17.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:17.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:17.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:17.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:17.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:17.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:17.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:17.174][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.184][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:17.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:17.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:17.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.194][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:17.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:17.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:17.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:17.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:17.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:17.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:17.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:17.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.214][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:17.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:17.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:17.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:17.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:17.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:17.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.233][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:17.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:17.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:17.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:17.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:17.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:17.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:17.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:17.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:17.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:17.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.262][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:17.264][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:17.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:17.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.272][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:17.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:17.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:17.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:17.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:17.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:17.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:17.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:17.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:17.339][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-04-12 16:05:17.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:17.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:17.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:17.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:17.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:17.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:17.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:17.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:17.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:17.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:17.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:17.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:17.368][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-04-12 16:05:17.369][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:17.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2025-04-12 16:05:17.373][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:17.374][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:17.375][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:17.377][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:17.378][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:17.379][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:17.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:17.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:17.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:17.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:17.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:17.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:17.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:17.395][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2025-04-12 16:05:17.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:17.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:17.401][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2025-04-12 16:05:17.679][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2025-04-12 16:05:17.970][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:17.973][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2025-04-12 16:05:17.978][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2025-04-12 16:05:17.981][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2025-04-12 16:05:17.983][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:17.985][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:17.986][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:17.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:17.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:17.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:18.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:18.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:18.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:18.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:18.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.024][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:18.026][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:18.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:18.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:18.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:18.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:18.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:18.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:18.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:18.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:18.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:18.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:18.076][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:18.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.080][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:18.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:18.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:18.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:18.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.101][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:18.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:18.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:18.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.111][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:18.112][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:18.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.121][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:18.122][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:18.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:18.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:18.179][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-04-12 16:05:18.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:18.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:18.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:18.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:18.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:18.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:18.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:18.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:18.209][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-04-12 16:05:18.210][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:18.212][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2025-04-12 16:05:18.214][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:18.215][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:18.216][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:18.218][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:18.219][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:18.220][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:18.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:18.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:18.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:18.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:18.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:18.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:18.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:18.237][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2025-04-12 16:05:18.240][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:18.241][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:18.243][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2025-04-12 16:05:18.524][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2025-04-12 16:05:18.813][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:18.815][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2025-04-12 16:05:18.820][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2025-04-12 16:05:18.823][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2025-04-12 16:05:18.825][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:18.827][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:18.828][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:18.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:18.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:18.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:18.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:18.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:18.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:18.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:18.845][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:18.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:18.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:18.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:18.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.865][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:18.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:18.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:18.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:18.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:18.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:18.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:18.886][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:18.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:18.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:18.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.895][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:18.896][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:18.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.910][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:18.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.916][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:18.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:18.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.921][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:18.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:18.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:18.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:18.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:18.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:18.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:18.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.940][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:18.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:18.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:18.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.950][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:18.951][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:18.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:18.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:18.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:18.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:18.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:18.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:18.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:18.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:19.008][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-04-12 16:05:19.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:19.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:19.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:19.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:19.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:19.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:19.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:19.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:19.037][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-04-12 16:05:19.038][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:19.040][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2025-04-12 16:05:19.042][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:19.043][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:19.044][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:19.046][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:19.047][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:19.048][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:19.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:19.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:19.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:19.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:19.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:19.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:19.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:19.065][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2025-04-12 16:05:19.068][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:19.069][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:19.071][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2025-04-12 16:05:19.352][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2025-04-12 16:05:19.636][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:19.639][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2025-04-12 16:05:19.643][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2025-04-12 16:05:19.647][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2025-04-12 16:05:19.649][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:19.650][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:19.652][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:19.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:19.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:19.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:19.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:19.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:19.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:19.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:19.669][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.678][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:19.680][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:19.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:19.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:19.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.688][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:19.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:19.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:19.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:19.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:19.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:19.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:19.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:19.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:19.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.718][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:19.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.723][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:19.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.733][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:19.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:19.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.742][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:19.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:19.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.752][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:19.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:19.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:19.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:19.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:19.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:19.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:19.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:19.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:19.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:19.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:19.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:19.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:19.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:19.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:19.820][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-04-12 16:05:19.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:19.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:19.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:19.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:19.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:19.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:19.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:19.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:19.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:19.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:19.849][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-04-12 16:05:19.850][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:19.852][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2025-04-12 16:05:19.854][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:19.855][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:19.856][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:19.858][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:19.859][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:19.860][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:19.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:19.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:19.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:19.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:19.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:19.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:19.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:19.877][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2025-04-12 16:05:19.880][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:19.909][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:19.911][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2025-04-12 16:05:20.193][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2025-04-12 16:05:20.493][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:20.496][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2025-04-12 16:05:20.500][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2025-04-12 16:05:20.504][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2025-04-12 16:05:20.506][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:20.508][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:20.509][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:20.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:20.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:20.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:20.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:20.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:20.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:20.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:20.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.536][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:20.537][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:20.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.541][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:20.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:20.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.546][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:20.547][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:20.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:20.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:20.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:20.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:20.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:20.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:20.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:20.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:20.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:20.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.575][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:20.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:20.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.580][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:20.581][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:20.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.584][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:20.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:20.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.590][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:20.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:20.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:20.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:20.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:20.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:20.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:20.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:20.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.610][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:20.611][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:20.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:20.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:20.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:20.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:20.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:20.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:20.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:20.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:20.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:20.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:20.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:20.677][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-04-12 16:05:20.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:20.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:20.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:20.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:20.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:20.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:20.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:20.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:20.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:20.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:20.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:20.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:20.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:20.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:20.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:20.707][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-04-12 16:05:20.708][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:20.710][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2025-04-12 16:05:20.711][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:20.713][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:20.714][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:20.715][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:20.717][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:20.718][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:20.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:20.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:20.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:20.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:20.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:20.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:20.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:20.735][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2025-04-12 16:05:20.738][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:20.739][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:20.740][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2025-04-12 16:05:21.024][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2025-04-12 16:05:21.311][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:21.314][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2025-04-12 16:05:21.318][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2025-04-12 16:05:21.322][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2025-04-12 16:05:21.324][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:21.325][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:21.327][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:21.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:21.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:21.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:21.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:21.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:21.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:21.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:21.344][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.345][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.354][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:21.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:21.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:21.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.364][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:21.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:21.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:21.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:21.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:21.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.383][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:21.385][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:21.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.393][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:21.394][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:21.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.398][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:21.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.403][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:21.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:21.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:21.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:21.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:21.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.418][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:21.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:21.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:21.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:21.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:21.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:21.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:21.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:21.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:21.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:21.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:21.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:21.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:21.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:21.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:21.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:21.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:21.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:21.507][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-04-12 16:05:21.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:21.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:21.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:21.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:21.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:21.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:21.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:21.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:21.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:21.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:21.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:21.536][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-04-12 16:05:21.537][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:21.539][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2025-04-12 16:05:21.541][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:21.542][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:21.543][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:21.545][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:21.546][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:21.547][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:21.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:21.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:21.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:21.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:21.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:21.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:21.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:21.564][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2025-04-12 16:05:21.567][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:21.568][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:21.570][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2025-04-12 16:05:21.858][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2025-04-12 16:05:22.140][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:22.143][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2025-04-12 16:05:22.147][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2025-04-12 16:05:22.152][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2025-04-12 16:05:22.155][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:22.157][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:22.159][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:22.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:22.176][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.186][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:22.187][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:22.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:22.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.196][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:22.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:22.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:22.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:22.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:22.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:22.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:22.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:22.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:22.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:22.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.226][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:22.227][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:22.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.231][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:22.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.236][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:22.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:22.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:22.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:22.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:22.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.250][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:22.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:22.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:22.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:22.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:22.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:22.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:22.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.270][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:22.271][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:22.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:22.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:22.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:22.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:22.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:22.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:22.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:22.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:22.327][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-04-12 16:05:22.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:22.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:22.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:22.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:22.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:22.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:22.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:22.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:22.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:22.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:22.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:22.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:22.534][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-04-12 16:05:22.536][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:22.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2025-04-12 16:05:22.539][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:22.540][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:22.542][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:22.543][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:22.544][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:22.545][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:22.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:22.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:22.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:22.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:22.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:22.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:22.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:22.562][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2025-04-12 16:05:22.565][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:22.566][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:22.568][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2025-04-12 16:05:22.847][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2025-04-12 16:05:23.143][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:23.145][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2025-04-12 16:05:23.150][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2025-04-12 16:05:23.153][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2025-04-12 16:05:23.155][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:23.157][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:23.158][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:23.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:23.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:23.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:23.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:23.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:23.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:23.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:23.175][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.185][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:23.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:23.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.188][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.195][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:23.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:23.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:23.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:23.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:23.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:23.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:23.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:23.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:23.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:23.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.230][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:23.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:23.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:23.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.249][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:23.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:23.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.259][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:23.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:23.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.264][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:23.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:23.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:23.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:23.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:23.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:23.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:23.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:23.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:23.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:23.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:23.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:23.327][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-04-12 16:05:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:23.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:23.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:23.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:23.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:23.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:23.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:23.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:23.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:23.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:23.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:23.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:23.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:23.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:23.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:23.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:23.384][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-04-12 16:05:23.385][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:23.387][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2025-04-12 16:05:23.388][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:23.390][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:23.391][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:23.392][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:23.393][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:23.395][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:23.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:23.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:23.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:23.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:23.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:23.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:23.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:23.411][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2025-04-12 16:05:23.415][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:23.416][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:23.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2025-04-12 16:05:23.702][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2025-04-12 16:05:23.983][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:23.986][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2025-04-12 16:05:23.991][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2025-04-12 16:05:23.995][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2025-04-12 16:05:23.998][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:23.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:24.001][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:24.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:24.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:24.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:24.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:24.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:24.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:24.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:24.018][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.028][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:24.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:24.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:24.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:24.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:24.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:24.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:24.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:24.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:24.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:24.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.069][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:24.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:24.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:24.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:24.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.084][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:24.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.089][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:24.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:24.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:24.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.103][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:24.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:24.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:24.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:24.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.113][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:24.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:24.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:24.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:24.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:24.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:24.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:24.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:24.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:24.180][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-04-12 16:05:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:24.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:24.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:24.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:24.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:24.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:24.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:24.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:24.209][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-04-12 16:05:24.210][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:24.212][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2025-04-12 16:05:24.214][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:24.215][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:24.216][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:24.218][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:24.219][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:24.220][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:24.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:24.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:24.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:24.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:24.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:24.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:24.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:24.237][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2025-04-12 16:05:24.240][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:24.241][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:24.242][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2025-04-12 16:05:24.531][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2025-04-12 16:05:24.813][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:24.816][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2025-04-12 16:05:24.820][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2025-04-12 16:05:24.823][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2025-04-12 16:05:24.825][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:24.827][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:24.828][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:24.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:24.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:24.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:24.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:24.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:24.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:24.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:24.846][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.855][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:24.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.860][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.865][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:24.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:24.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:24.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:24.877][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:24.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:24.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:24.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:24.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:24.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:24.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.895][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:24.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:24.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.900][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:24.902][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:24.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:24.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:24.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:24.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:24.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:24.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:24.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:24.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.930][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:24.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:24.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:24.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:24.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:24.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:24.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:24.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:24.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:24.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:25.000][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-04-12 16:05:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:25.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:25.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:25.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:25.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:25.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:25.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:25.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:25.044][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-04-12 16:05:25.046][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:25.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2025-04-12 16:05:25.050][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:25.051][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:25.052][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:25.054][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:25.055][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:25.056][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:25.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:25.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:25.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:25.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:25.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:25.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:25.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:25.073][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2025-04-12 16:05:25.077][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:25.078][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:25.079][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2025-04-12 16:05:25.359][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2025-04-12 16:05:25.639][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:25.642][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2025-04-12 16:05:25.646][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2025-04-12 16:05:25.650][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2025-04-12 16:05:25.652][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:25.653][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:25.655][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:25.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:25.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:25.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:25.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:25.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:25.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:25.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:25.672][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.682][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:25.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:25.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.687][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:25.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:25.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.692][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:25.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:25.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:25.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:25.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:25.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:25.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:25.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:25.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:25.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:25.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:25.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.721][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:25.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:25.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.726][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:25.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:25.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:25.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:25.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:25.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.746][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:25.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:25.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:25.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:25.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.756][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:25.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:25.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:25.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:25.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.766][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:25.767][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:25.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:25.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:25.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:25.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:25.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:25.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:25.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:25.824][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-04-12 16:05:25.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:25.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:25.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:25.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:25.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:25.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:25.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:25.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:25.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:25.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:25.853][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-04-12 16:05:25.854][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:25.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2025-04-12 16:05:25.858][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:25.859][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:25.861][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:25.862][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:25.863][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:25.864][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:25.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:25.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:25.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:25.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:25.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:25.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:25.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:25.881][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2025-04-12 16:05:25.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:25.886][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:25.887][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2025-04-12 16:05:26.167][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2025-04-12 16:05:26.447][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:26.450][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2025-04-12 16:05:26.454][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2025-04-12 16:05:26.458][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2025-04-12 16:05:26.460][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:26.461][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:26.463][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:26.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:26.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:26.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:26.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:26.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:26.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:26.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:26.480][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.490][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:26.491][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:26.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:26.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:26.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.499][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:26.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:26.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:26.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:26.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.509][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:26.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:26.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:26.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:26.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:26.520][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:26.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:26.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:26.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.534][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:26.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:26.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.539][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:26.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:26.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:26.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.554][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:26.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:26.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.564][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:26.565][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:26.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:26.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:26.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:26.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:26.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:26.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:26.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:26.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:26.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:26.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:26.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:26.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:26.643][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-04-12 16:05:26.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:26.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:26.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:26.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:26.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:26.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:26.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:26.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:26.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:26.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:26.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:26.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:26.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:26.672][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-04-12 16:05:26.674][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:26.675][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2025-04-12 16:05:26.677][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:26.678][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:26.680][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:26.681][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:26.682][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:26.683][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:26.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:26.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:26.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:26.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:26.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:26.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:26.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:26.700][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2025-04-12 16:05:26.703][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:26.705][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:26.706][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2025-04-12 16:05:26.999][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2025-04-12 16:05:27.285][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:27.288][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2025-04-12 16:05:27.292][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2025-04-12 16:05:27.296][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2025-04-12 16:05:27.298][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:27.300][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:27.301][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:27.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:27.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:27.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:27.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:27.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:27.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:27.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:27.318][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.328][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:27.330][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:27.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.338][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:27.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:27.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:27.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:27.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:27.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:27.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.358][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:27.359][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:27.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:27.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.368][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:27.369][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:27.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.373][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:27.374][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:27.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.378][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:27.384][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:27.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:27.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.393][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:27.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:27.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.403][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:27.404][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:27.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:27.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:27.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.412][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:27.414][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:27.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:27.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:27.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:27.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:27.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:27.471][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-04-12 16:05:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:27.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:27.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:27.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:27.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:27.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:27.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:27.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:27.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:27.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:27.500][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-04-12 16:05:27.501][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:27.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2025-04-12 16:05:27.505][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:27.506][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:27.507][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:27.508][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:27.510][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:27.511][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:27.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:27.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:27.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:27.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:27.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:27.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:27.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:27.528][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2025-04-12 16:05:27.531][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:27.532][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:27.534][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2025-04-12 16:05:27.811][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2025-04-12 16:05:28.091][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:28.093][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2025-04-12 16:05:28.098][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2025-04-12 16:05:28.101][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2025-04-12 16:05:28.103][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:28.105][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:28.106][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:28.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.123][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.143][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:28.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:28.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.153][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:28.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:28.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:28.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:28.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:28.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:28.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:28.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:28.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.183][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:28.184][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:28.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.188][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:28.189][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:28.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:28.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.207][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:28.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:28.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.211][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:28.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:28.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.217][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:28.218][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:28.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:28.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:28.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:28.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:28.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:28.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:28.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.284][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-04-12 16:05:28.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.329][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:28.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.355][private$selectFields]
biodb.TRACE[2025-04-12 16:05:28.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:28.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:28.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.370][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.376][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:05:28.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.417][private$selectFields]
biodb.TRACE[2025-04-12 16:05:28.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:28.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:28.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.432][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:28.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:05:28.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.479][private$selectFields]
biodb.TRACE[2025-04-12 16:05:28.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:28.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:28.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.494][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.500][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:28.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.516][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:05:28.517][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:28.518][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:28.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:28.568][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:28.571][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:28.573][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2025-04-12 16:05:28.574][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:28.577][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2025-04-12 16:05:28.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.695][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:28.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.722][private$selectFields]
biodb.TRACE[2025-04-12 16:05:28.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:28.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:28.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.728][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.738][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.743][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:05:28.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.786][private$selectFields]
biodb.TRACE[2025-04-12 16:05:28.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:28.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:28.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:28.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-04-12 16:05:28.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.848][private$selectFields]
biodb.TRACE[2025-04-12 16:05:28.849][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:28.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:28.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.863][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:28.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.869][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:28.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-04-12 16:05:28.886][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:28.887][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:28.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:28.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:28.908][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:28.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2025-04-12 16:05:28.911][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:28.914][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2025-04-12 16:05:28.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:28.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:28.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:28.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:28.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:28.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:28.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:28.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:28.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:28.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.125][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:29.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.152][private$selectFields]
biodb.TRACE[2025-04-12 16:05:29.153][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:29.154][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:29.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.167][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.173][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-04-12 16:05:29.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.214][private$selectFields]
biodb.TRACE[2025-04-12 16:05:29.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:29.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:29.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.229][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.235][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-04-12 16:05:29.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.276][private$selectFields]
biodb.TRACE[2025-04-12 16:05:29.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:29.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:29.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.292][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.298][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-04-12 16:05:29.315][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:29.316][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:29.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:29.334][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:29.337][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:29.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2025-04-12 16:05:29.340][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:29.343][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2025-04-12 16:05:29.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.403][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:29.407][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:29.415][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2025-04-12 16:05:29.417][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:29.420][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2025-04-12 16:05:29.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.507][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:29.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.532][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.533][private$selectFields]
biodb.TRACE[2025-04-12 16:05:29.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:29.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:29.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.549][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.554][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:29.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-04-12 16:05:29.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.596][private$selectFields]
biodb.TRACE[2025-04-12 16:05:29.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:29.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:29.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.611][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.617][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-04-12 16:05:29.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.659][private$selectFields]
biodb.TRACE[2025-04-12 16:05:29.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:29.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:29.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.674][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.680][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:29.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-04-12 16:05:29.697][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:29.698][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:29.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:29.741][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:29.745][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:29.746][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:05:29.748][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:29.750][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:05:29.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.782][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:29.785][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:29.786][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:05:29.788][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:29.790][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:05:29.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:29.857][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:29.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.882][private$selectFields]
biodb.TRACE[2025-04-12 16:05:29.884][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:29.885][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:29.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.898][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.904][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-04-12 16:05:29.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.945][private$selectFields]
biodb.TRACE[2025-04-12 16:05:29.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:29.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:29.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.960][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:29.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.965][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:29.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:29.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:05:29.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:29.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:29.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:29.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:29.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:29.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:29.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.010][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.011][private$selectFields]
biodb.TRACE[2025-04-12 16:05:30.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:30.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:30.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.027][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.033][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:30.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-04-12 16:05:30.051][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:30.052][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:30.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:30.070][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:30.074][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:30.075][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:05:30.077][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:30.079][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:05:30.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:30.143][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:30.144][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:05:30.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:30.149][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:05:30.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.238][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:30.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.265][private$selectFields]
biodb.TRACE[2025-04-12 16:05:30.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:30.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:30.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.288][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.294][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.310][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:05:30.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.336][private$selectFields]
biodb.TRACE[2025-04-12 16:05:30.337][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:30.338][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:30.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:05:30.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.399][private$selectFields]
biodb.TRACE[2025-04-12 16:05:30.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:30.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:30.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.404][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.405][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.414][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.420][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:30.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.436][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:05:30.437][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:30.439][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:30.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:30.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:30.460][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:30.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:05:30.463][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:30.465][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:05:30.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:30.697][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:30.698][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:05:30.707][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:30.709][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:05:30.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:30.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:30.797][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:30.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.823][private$selectFields]
biodb.TRACE[2025-04-12 16:05:30.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:30.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:30.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.838][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.844][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:30.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:05:30.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.886][private$selectFields]
biodb.TRACE[2025-04-12 16:05:30.887][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:30.888][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:30.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.901][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.907][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:05:30.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:30.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:30.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:30.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:30.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:30.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:30.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:30.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.949][private$selectFields]
biodb.TRACE[2025-04-12 16:05:30.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:30.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:30.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.964][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:30.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.970][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:30.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:30.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:05:30.987][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:30.988][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:31.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:31.032][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:31.036][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:31.037][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2025-04-12 16:05:31.039][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:31.041][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2025-04-12 16:05:31.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.220][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:31.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.246][private$selectFields]
biodb.TRACE[2025-04-12 16:05:31.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:31.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:31.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.261][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.267][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:05:31.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.308][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.309][private$selectFields]
biodb.TRACE[2025-04-12 16:05:31.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:31.311][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:31.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.313][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.324][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.330][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.346][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-04-12 16:05:31.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.371][private$selectFields]
biodb.TRACE[2025-04-12 16:05:31.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:31.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:31.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.386][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.392][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:31.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-04-12 16:05:31.409][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:31.410][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:31.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:31.428][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:31.432][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:31.433][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2025-04-12 16:05:31.435][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:31.437][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2025-04-12 16:05:31.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.527][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:31.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.560][private$selectFields]
biodb.TRACE[2025-04-12 16:05:31.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:31.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:31.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.576][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:05:31.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.623][private$selectFields]
biodb.TRACE[2025-04-12 16:05:31.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:31.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:31.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.639][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.644][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:05:31.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.686][private$selectFields]
biodb.TRACE[2025-04-12 16:05:31.688][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:31.689][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:31.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.702][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:31.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.708][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:31.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-04-12 16:05:31.725][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:31.727][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:31.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:31.745][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:31.748][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:31.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2025-04-12 16:05:31.752][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:31.754][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2025-04-12 16:05:31.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:31.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:31.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:31.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:31.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:31.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:31.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:31.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:31.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:31.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.570][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:32.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.597][private$selectFields]
biodb.TRACE[2025-04-12 16:05:32.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:32.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:32.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.612][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.618][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:05:32.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.659][private$selectFields]
biodb.TRACE[2025-04-12 16:05:32.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:32.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:32.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.674][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.680][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:32.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-04-12 16:05:32.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.721][private$selectFields]
biodb.TRACE[2025-04-12 16:05:32.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:32.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:32.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.737][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:32.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.743][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-04-12 16:05:32.760][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:32.761][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:05:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:32.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:32.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:32.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:32.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:32.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:32.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:32.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:32.871][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:32.874][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:32.876][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:32.878][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:33.164][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:33.557][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:33.560][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2025-04-12 16:05:33.565][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2025-04-12 16:05:33.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:33.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:33.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:33.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:33.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:33.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:33.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:33.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:33.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:33.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:33.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:33.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:33.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:33.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:33.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:33.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:33.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:33.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:33.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:33.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:33.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:33.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:33.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:33.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:33.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:33.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:33.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:33.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:33.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:33.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:33.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:33.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:33.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:33.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:33.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:33.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:33.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:33.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:33.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:33.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:33.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:33.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:33.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:33.727][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-04-12 16:05:33.729][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:33.731][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2025-04-12 16:05:33.732][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:33.734][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:33.735][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:33.736][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:33.737][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:33.738][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:33.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:33.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:33.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:33.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:33.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:33.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:33.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:33.756][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2025-04-12 16:05:33.759][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:33.760][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:33.762][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2025-04-12 16:05:34.049][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2025-04-12 16:05:34.341][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:34.344][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2025-04-12 16:05:34.348][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2025-04-12 16:05:34.352][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2025-04-12 16:05:34.354][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:34.356][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:34.357][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:34.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:34.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:34.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:34.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:34.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:34.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:34.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:34.374][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.384][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:34.385][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:34.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:34.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:34.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:34.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:34.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:34.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:34.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:34.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:34.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.423][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:34.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:34.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:34.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.433][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:34.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:34.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.453][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:34.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:34.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:34.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.463][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:34.464][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:34.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:34.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:34.474][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:34.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:34.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:34.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:34.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:34.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:34.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:34.541][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-04-12 16:05:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:34.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:34.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:34.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:34.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:34.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:34.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:34.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:34.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:34.571][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-04-12 16:05:34.572][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:34.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2025-04-12 16:05:34.575][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:34.577][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:34.578][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:34.579][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:34.580][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:34.581][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:34.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:34.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:34.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:34.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:34.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:34.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:34.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:34.598][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2025-04-12 16:05:34.601][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:34.602][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:34.604][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2025-04-12 16:05:34.889][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2025-04-12 16:05:35.178][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:35.181][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2025-04-12 16:05:35.185][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2025-04-12 16:05:35.189][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2025-04-12 16:05:35.191][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:35.193][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:35.194][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:35.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:35.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:35.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:35.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:35.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:35.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:35.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:35.211][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.221][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:35.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:35.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:35.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:35.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.231][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:35.232][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:35.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:35.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:35.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:35.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:35.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:35.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:35.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.261][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:35.262][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:35.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.266][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:35.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.271][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:35.272][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:35.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:35.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:35.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:35.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:35.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:35.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:35.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.310][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:35.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:35.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:35.367][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-04-12 16:05:35.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:35.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:35.383][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:35.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:35.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:35.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:35.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:35.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:35.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:35.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.409][private$selectFields]
biodb.TRACE[2025-04-12 16:05:35.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:35.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:35.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.423][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.424][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:35.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:05:35.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:35.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:35.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:35.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:35.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:35.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:35.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.472][private$selectFields]
biodb.TRACE[2025-04-12 16:05:35.473][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:35.474][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:35.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.481][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.482][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.487][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.493][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:35.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.518][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:05:35.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:35.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:35.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:35.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:35.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:35.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:35.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.545][private$selectFields]
biodb.TRACE[2025-04-12 16:05:35.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:35.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:35.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:35.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.566][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:35.582][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-12 16:05:35.583][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:35.584][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:35.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:35.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:35.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:35.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:35.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:35.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:35.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:35.602][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:35.605][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:35.607][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:35.609][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:35.896][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:36.320][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:36.323][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2025-04-12 16:05:36.329][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2025-04-12 16:05:36.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:36.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:36.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:36.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:36.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:36.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:36.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:36.350][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-04-12 16:05:36.352][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:36.354][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2025-04-12 16:05:36.355][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:36.357][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:36.358][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:36.359][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:36.360][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:36.362][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:36.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:36.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:36.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:36.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:36.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:36.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:36.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:36.379][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2025-04-12 16:05:36.382][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:36.383][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:36.385][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2025-04-12 16:05:36.675][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2025-04-12 16:05:36.962][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:36.965][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2025-04-12 16:05:36.970][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2025-04-12 16:05:36.973][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2025-04-12 16:05:36.976][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:36.977][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:36.978][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:36.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:36.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:36.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:36.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:36.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:36.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:36.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:36.996][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:36.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:36.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.009][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:37.011][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:37.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.023][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:37.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:37.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:37.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:37.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:37.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:37.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:37.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:37.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:37.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:37.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:37.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:37.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.065][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:37.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:37.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.070][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:37.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:37.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.085][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:37.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:37.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:37.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.095][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:37.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:37.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:37.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:37.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.104][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:37.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:37.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:37.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:37.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:37.162][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-04-12 16:05:37.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:37.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:37.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:37.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:37.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:37.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:37.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:37.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:37.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:37.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:37.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:37.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:37.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:37.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:37.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:37.221][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-04-12 16:05:37.229][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:37.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2025-04-12 16:05:37.237][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:37.238][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:37.240][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:37.241][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:37.243][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:37.244][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:37.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:37.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:37.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:37.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:37.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:37.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:37.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:37.261][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2025-04-12 16:05:37.264][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:37.265][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:37.267][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2025-04-12 16:05:37.552][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2025-04-12 16:05:37.843][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:37.846][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2025-04-12 16:05:37.851][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2025-04-12 16:05:37.855][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2025-04-12 16:05:37.857][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:37.859][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:37.860][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:37.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:37.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:37.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:37.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:37.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:37.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:37.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:37.877][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:37.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:37.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:37.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:37.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:37.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:37.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:37.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:37.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:37.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:37.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:37.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:37.918][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:37.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:37.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:37.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.926][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:37.927][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:37.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.936][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:37.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:37.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.941][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:37.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:37.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:37.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:37.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:37.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.966][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:37.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:37.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.976][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:37.977][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:37.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:37.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:37.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:38.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:38.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:38.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:38.035][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-04-12 16:05:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:38.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:38.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:38.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:38.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:38.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:38.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:38.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:38.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:38.079][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:38.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:38.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:38.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:38.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:38.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:38.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:38.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.106][private$selectFields]
biodb.TRACE[2025-04-12 16:05:38.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:38.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:38.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.127][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-12 16:05:38.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:38.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:38.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:38.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:38.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:38.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:38.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.170][private$selectFields]
biodb.TRACE[2025-04-12 16:05:38.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:38.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:38.173][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:38.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:05:38.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:38.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:38.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:38.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:38.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:38.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:38.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.250][private$selectFields]
biodb.TRACE[2025-04-12 16:05:38.251][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:38.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:38.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.265][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:38.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.271][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:38.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:38.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:38.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:38.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:05:38.288][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:38.290][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:38.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:38.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:38.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:38.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:38.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:38.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:38.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:38.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:38.316][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:38.317][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:38.319][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:38.602][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:38.897][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:38.900][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2025-04-12 16:05:38.906][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2025-04-12 16:05:38.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:38.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:38.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:38.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:38.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:38.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:38.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:38.924][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-04-12 16:05:38.925][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:38.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2025-04-12 16:05:38.928][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:38.930][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:38.931][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:38.932][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:38.934][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:38.935][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:38.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:38.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:38.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:38.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:38.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:38.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:38.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:38.952][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2025-04-12 16:05:38.955][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:38.956][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:38.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2025-04-12 16:05:39.242][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2025-04-12 16:05:39.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:39.535][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2025-04-12 16:05:39.539][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2025-04-12 16:05:39.543][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2025-04-12 16:05:39.545][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:39.546][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:39.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:39.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:39.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:39.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:39.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:39.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:39.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:39.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:39.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.575][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:39.576][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:39.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.585][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:39.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:39.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:39.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.595][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:39.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:39.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:39.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:39.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:39.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:39.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.614][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:39.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:39.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.619][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:39.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:39.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.639][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:39.640][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:39.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.649][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:39.650][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:39.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:39.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:39.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:39.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:39.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:39.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:39.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:39.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:39.716][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-04-12 16:05:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:39.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:39.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:39.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:39.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:39.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:39.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:39.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:39.746][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-04-12 16:05:39.747][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:39.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2025-04-12 16:05:39.750][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:39.752][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:39.753][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:39.754][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:39.756][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:39.757][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:39.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:39.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:39.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:39.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:39.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:39.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:39.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:39.774][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2025-04-12 16:05:39.777][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:39.778][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:39.779][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2025-04-12 16:05:40.069][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2025-04-12 16:05:40.351][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:40.354][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2025-04-12 16:05:40.359][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2025-04-12 16:05:40.362][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2025-04-12 16:05:40.364][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:40.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:40.367][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:40.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:40.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:40.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:40.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:40.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:40.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:40.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:40.398][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.408][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:40.409][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:40.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:40.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:40.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.418][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:40.419][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:40.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:40.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:40.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:40.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:40.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:40.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:40.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:40.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:40.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:40.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.452][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:40.453][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.457][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:40.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.472][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:40.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.481][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:40.483][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:40.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:40.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:40.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:40.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:40.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:40.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:40.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:40.549][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-04-12 16:05:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:40.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:40.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:40.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:40.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:40.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:40.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:40.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:40.580][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-04-12 16:05:40.581][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:40.583][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2025-04-12 16:05:40.584][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:40.586][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:40.587][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:40.588][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:40.590][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:40.591][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:40.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:40.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:40.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:40.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:40.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:40.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:40.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:40.608][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2025-04-12 16:05:40.611][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:40.612][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:40.614][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2025-04-12 16:05:40.899][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2025-04-12 16:05:41.182][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:41.184][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2025-04-12 16:05:41.189][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2025-04-12 16:05:41.192][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2025-04-12 16:05:41.194][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:41.196][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:41.197][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:41.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:41.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:41.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:41.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:41.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:41.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:41.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:41.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.225][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:41.226][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:41.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:41.236][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:41.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:41.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:41.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:41.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:41.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:41.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:41.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:41.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:41.265][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:41.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.269][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:41.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:41.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.279][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.289][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:41.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:41.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.299][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:41.300][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:41.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.309][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:41.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:41.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:41.377][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-04-12 16:05:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:41.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:41.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:41.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:41.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:41.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:41.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:41.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:41.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:41.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:41.407][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-04-12 16:05:41.408][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:41.410][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2025-04-12 16:05:41.411][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:41.413][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:41.414][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:41.415][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:41.417][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:41.418][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:41.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:41.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:41.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:41.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:41.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:41.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:41.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:41.434][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2025-04-12 16:05:41.437][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:41.439][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:41.440][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2025-04-12 16:05:41.718][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2025-04-12 16:05:42.024][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:42.026][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2025-04-12 16:05:42.031][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2025-04-12 16:05:42.034][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2025-04-12 16:05:42.036][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:42.038][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:42.039][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:42.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.056][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.057][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.066][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:42.067][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:42.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.075][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:42.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:42.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:42.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:42.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:42.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:42.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:42.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:42.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:42.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.105][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:42.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:42.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.110][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:42.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:42.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.115][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:42.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:42.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.120][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:42.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:42.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.134][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:42.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:42.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:42.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.144][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:42.145][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:42.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.154][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:42.155][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:42.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:42.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.210][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-04-12 16:05:42.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.254][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:42.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.280][private$selectFields]
biodb.TRACE[2025-04-12 16:05:42.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:42.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:42.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.300][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:42.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-12 16:05:42.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.342][private$selectFields]
biodb.TRACE[2025-04-12 16:05:42.343][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:42.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:42.345][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.356][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.366][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.374][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-12 16:05:42.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.417][private$selectFields]
biodb.TRACE[2025-04-12 16:05:42.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:42.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:42.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.432][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:42.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-12 16:05:42.455][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:42.456][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:42.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:42.500][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:42.504][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:42.505][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:05:42.507][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:42.509][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:05:42.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:42.516][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:42.518][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:05:42.520][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:42.522][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:05:42.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.612][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:42.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.639][private$selectFields]
biodb.TRACE[2025-04-12 16:05:42.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:42.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:42.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.647][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.654][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.660][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.676][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:05:42.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.702][private$selectFields]
biodb.TRACE[2025-04-12 16:05:42.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:42.704][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:42.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.717][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.723][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:05:42.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.764][private$selectFields]
biodb.TRACE[2025-04-12 16:05:42.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:42.767][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:42.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.780][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.786][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:05:42.812][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:42.813][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:42.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:42.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:42.834][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:42.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:05:42.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:42.840][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:05:42.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:42.927][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:42.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:42.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:42.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:42.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:42.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.954][private$selectFields]
biodb.TRACE[2025-04-12 16:05:42.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:42.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:42.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.969][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:42.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.975][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:42.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:42.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:42.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:05:42.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:42.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:42.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:43.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.018][private$selectFields]
biodb.TRACE[2025-04-12 16:05:43.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:43.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:43.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:05:43.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:43.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.081][private$selectFields]
biodb.TRACE[2025-04-12 16:05:43.082][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:43.083][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:43.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.096][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.102][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:05:43.119][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:43.120][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:43.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:43.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:43.141][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:05:43.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:05:43.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:05:43.147][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:05:43.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:43.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:43.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:43.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:43.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:43.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:43.245][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:43.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:43.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.271][private$selectFields]
biodb.TRACE[2025-04-12 16:05:43.272][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:43.274][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:43.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.287][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.293][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:05:43.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:43.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.334][private$selectFields]
biodb.TRACE[2025-04-12 16:05:43.335][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:43.336][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:43.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.340][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.349][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:05:43.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:43.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.398][private$selectFields]
biodb.TRACE[2025-04-12 16:05:43.399][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:43.400][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:43.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.413][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:43.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.419][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:43.435][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-12 16:05:43.436][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:43.437][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:43.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:43.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:43.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:43.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:43.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:43.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:43.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:43.481][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:43.485][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:43.486][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:43.488][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:43.771][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:44.060][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:44.063][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2025-04-12 16:05:44.068][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2025-04-12 16:05:44.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:44.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:44.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:44.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:44.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:44.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:44.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:44.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:44.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:44.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:44.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:44.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:44.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:44.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:44.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:44.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:44.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:44.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:44.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:44.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:44.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:44.144][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-04-12 16:05:44.145][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:44.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2025-04-12 16:05:44.148][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:44.150][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:44.151][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:44.152][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:44.154][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:44.155][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:44.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:44.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:44.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:44.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:44.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:44.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:44.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:44.172][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2025-04-12 16:05:44.175][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:44.176][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:44.178][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2025-04-12 16:05:44.459][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2025-04-12 16:05:44.754][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:44.756][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2025-04-12 16:05:44.761][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2025-04-12 16:05:44.764][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2025-04-12 16:05:44.766][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:44.768][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:44.769][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:44.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:44.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:44.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:44.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:44.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:44.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:44.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:44.786][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.808][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:44.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:44.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:44.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.818][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:44.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:44.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:44.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:44.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:44.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:44.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:44.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.848][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:44.849][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:44.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.857][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:44.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:44.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:44.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.877][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:44.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:44.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:44.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.887][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:44.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:44.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.897][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:44.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:44.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:44.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:44.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:44.954][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-04-12 16:05:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:44.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:44.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:44.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:44.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:44.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:44.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:44.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:44.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:44.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:44.983][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-04-12 16:05:44.984][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:44.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2025-04-12 16:05:44.987][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:44.989][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:44.992][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:44.993][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:44.995][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:44.997][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:45.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:45.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:45.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:45.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:45.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:45.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:45.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:45.021][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2025-04-12 16:05:45.025][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:45.027][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:45.029][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2025-04-12 16:05:45.543][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2025-04-12 16:05:45.833][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:45.836][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2025-04-12 16:05:45.841][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2025-04-12 16:05:45.844][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2025-04-12 16:05:45.847][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:45.848][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:45.850][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:45.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:45.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:45.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:45.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:45.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:45.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:45.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:45.867][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:45.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:45.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:45.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:45.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.877][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:45.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:45.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:45.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:45.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:45.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.896][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:45.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:45.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:45.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:45.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:45.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:45.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:45.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.920][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:45.921][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:45.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:45.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.930][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:45.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:45.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:45.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:45.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:45.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.950][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:45.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:45.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.960][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:45.961][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:45.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:45.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:45.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:45.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:45.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:45.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:46.037][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-04-12 16:05:46.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:46.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:46.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:46.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:46.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:46.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:46.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:46.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:46.069][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-04-12 16:05:46.070][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:46.072][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2025-04-12 16:05:46.073][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:46.075][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:46.076][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:46.077][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:46.079][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:46.080][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:46.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:46.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:46.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:46.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:46.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:46.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:46.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:46.099][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2025-04-12 16:05:46.102][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:46.103][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:46.105][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2025-04-12 16:05:46.402][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2025-04-12 16:05:46.691][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:46.693][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2025-04-12 16:05:46.698][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2025-04-12 16:05:46.701][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2025-04-12 16:05:46.704][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:46.705][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:46.707][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:46.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:46.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:46.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:46.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:46.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:46.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:46.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:46.724][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.734][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:46.735][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:46.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:46.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:46.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:46.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:46.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:46.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:46.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:46.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:46.765][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:46.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:46.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:46.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.774][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:46.775][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:46.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:46.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:46.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.784][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:46.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:46.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.789][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:46.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.804][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:46.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:46.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.814][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:46.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:46.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:46.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:46.825][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:46.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:46.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:46.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:46.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:46.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:46.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:46.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:46.882][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-04-12 16:05:46.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:46.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:46.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:46.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:46.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:46.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:46.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:46.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:46.911][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-04-12 16:05:46.912][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:46.914][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2025-04-12 16:05:46.916][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:46.917][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:46.919][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:46.920][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:46.921][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:46.922][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:46.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:46.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:46.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:46.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:46.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:46.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:46.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:46.939][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2025-04-12 16:05:46.942][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:46.943][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:46.945][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2025-04-12 16:05:47.230][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2025-04-12 16:05:47.530][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:47.533][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2025-04-12 16:05:47.537][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2025-04-12 16:05:47.541][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2025-04-12 16:05:47.543][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:47.545][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:47.546][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:47.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:47.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:47.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:47.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:47.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:47.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:47.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:47.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.574][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:47.576][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:47.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.585][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:47.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:47.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.595][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:47.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:47.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:47.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:47.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:47.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.620][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.636][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:47.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:47.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:47.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.657][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:47.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:47.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.667][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:47.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:47.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:47.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:47.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:47.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:47.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:47.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:47.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:47.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:47.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:47.735][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-04-12 16:05:47.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:47.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:47.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:47.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:47.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:47.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:47.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:47.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:47.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:47.764][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-04-12 16:05:47.766][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:47.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2025-04-12 16:05:47.769][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:47.771][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:47.772][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:47.773][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:47.775][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:47.776][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:47.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:47.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:47.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:47.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:47.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:47.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:47.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:47.793][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2025-04-12 16:05:47.796][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:47.797][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:47.798][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2025-04-12 16:05:48.091][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2025-04-12 16:05:48.397][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:48.400][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2025-04-12 16:05:48.404][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2025-04-12 16:05:48.408][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2025-04-12 16:05:48.410][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:48.411][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:48.413][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:48.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:48.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:48.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:48.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:48.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:48.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:48.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:48.430][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.439][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:48.441][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:48.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:48.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:48.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.449][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:48.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:48.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:48.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:48.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.469][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:48.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:48.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.478][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:48.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:48.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.483][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:48.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:48.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:48.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:48.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:48.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.512][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:48.514][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:48.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:48.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:48.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:48.579][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-04-12 16:05:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:48.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:48.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:48.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:48.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:48.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:48.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:48.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:48.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:48.623][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:05:48.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:48.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:48.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:48.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:48.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:48.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:48.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.660][private$selectFields]
biodb.TRACE[2025-04-12 16:05:48.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:48.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:48.663][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.675][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.681][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:48.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:05:48.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:48.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:48.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:48.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:48.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:48.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:48.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.723][private$selectFields]
biodb.TRACE[2025-04-12 16:05:48.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:48.725][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:48.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.738][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.744][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:48.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:05:48.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:48.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:48.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:48.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:48.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:48.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:48.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.786][private$selectFields]
biodb.TRACE[2025-04-12 16:05:48.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:05:48.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:05:48.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:05:48.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:05:48.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:48.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:48.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:48.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:05:48.824][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:05:48.826][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:05:48.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:48.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:48.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:48.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:48.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:48.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:48.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:48.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:05:48.846][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:48.848][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:48.850][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-04-12 16:05:49.137][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-04-12 16:05:49.562][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:49.565][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2025-04-12 16:05:49.570][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2025-04-12 16:05:49.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:49.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:49.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:49.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:49.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:49.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:49.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:49.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:49.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:49.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:49.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:49.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:49.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:49.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:49.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:49.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:49.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:49.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:49.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:49.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:49.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:49.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:49.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:49.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:49.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:49.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:49.648][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-04-12 16:05:49.649][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:49.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2025-04-12 16:05:49.653][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:49.654][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:49.655][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:49.657][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:49.658][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:49.659][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:49.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:49.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:49.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:49.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:49.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:49.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:49.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:49.675][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2025-04-12 16:05:49.678][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:49.680][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:49.681][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2025-04-12 16:05:49.964][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2025-04-12 16:05:50.249][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:50.252][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2025-04-12 16:05:50.256][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2025-04-12 16:05:50.260][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2025-04-12 16:05:50.262][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:50.264][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:50.265][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:50.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:50.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:50.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:50.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:50.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:50.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:50.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:50.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.294][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:50.295][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:50.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:50.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:50.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:50.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:50.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:50.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:50.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:50.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:50.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:50.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.346][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:50.348][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:50.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.352][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:50.353][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:50.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.357][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:50.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.363][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.372][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:50.373][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:50.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.382][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:50.383][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:50.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.392][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:50.393][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:50.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:50.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:50.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:50.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:50.449][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-04-12 16:05:50.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:50.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:50.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:50.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:50.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:50.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:50.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:50.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:50.478][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-04-12 16:05:50.480][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:50.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2025-04-12 16:05:50.483][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:50.485][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:50.486][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:50.487][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:50.488][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:50.489][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:50.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:50.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:50.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:50.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:50.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:50.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:50.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:50.506][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2025-04-12 16:05:50.509][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:50.511][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:50.512][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2025-04-12 16:05:50.804][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2025-04-12 16:05:51.095][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:51.098][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2025-04-12 16:05:51.102][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2025-04-12 16:05:51.106][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2025-04-12 16:05:51.108][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:51.110][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:51.111][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:51.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:51.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:51.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:51.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:51.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:51.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:51.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:51.128][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.138][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:51.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:51.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:51.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:51.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:51.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:51.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:51.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:51.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:51.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:51.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:51.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:51.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:51.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:51.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.182][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:51.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:51.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:51.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:51.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:51.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:51.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:51.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.212][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:51.213][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:51.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:51.223][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:51.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:51.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:51.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:51.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:51.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:51.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:51.279][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-04-12 16:05:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:51.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:51.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:51.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:51.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:51.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:51.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:51.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:51.309][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-04-12 16:05:51.310][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:51.312][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2025-04-12 16:05:51.313][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:51.315][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:51.316][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:51.317][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:51.319][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:51.320][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:51.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:51.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:51.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:51.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:51.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:51.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:51.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:51.347][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2025-04-12 16:05:51.351][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:51.352][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:51.353][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2025-04-12 16:05:51.642][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2025-04-12 16:05:51.930][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:51.933][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2025-04-12 16:05:51.937][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2025-04-12 16:05:51.941][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2025-04-12 16:05:51.943][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:51.945][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:51.946][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:51.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:51.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:51.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:51.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:51.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:51.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:51.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:51.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:51.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:51.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.973][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:51.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:51.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.983][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:51.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:51.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:51.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:51.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:51.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:51.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:51.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:52.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:52.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:52.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:52.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:52.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.029][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:52.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:52.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.049][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:52.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:52.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.059][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:52.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:52.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:52.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:52.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:52.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:52.127][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-04-12 16:05:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:52.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:52.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:52.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:52.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:52.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:52.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:52.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:52.156][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-04-12 16:05:52.158][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:52.159][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2025-04-12 16:05:52.161][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:52.162][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:52.164][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:52.165][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:52.166][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:52.167][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:52.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:52.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:52.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:52.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:52.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:52.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:52.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:52.184][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2025-04-12 16:05:52.187][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:52.188][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:52.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2025-04-12 16:05:52.477][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2025-04-12 16:05:52.771][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:52.774][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2025-04-12 16:05:52.778][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2025-04-12 16:05:52.782][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2025-04-12 16:05:52.784][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:52.785][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:52.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:52.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:52.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:52.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:52.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:52.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:52.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:52.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:52.804][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.814][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:52.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:52.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:52.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:52.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:52.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:52.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:52.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:52.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.853][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:52.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:52.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.858][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:52.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:52.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.862][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:52.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.868][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.878][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:52.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:52.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.888][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:52.890][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:52.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:52.900][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:52.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:52.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:52.969][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-04-12 16:05:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:52.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:52.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:52.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:52.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:52.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:52.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:52.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:53.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:53.003][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-04-12 16:05:53.004][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:53.007][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2025-04-12 16:05:53.009][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:53.011][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:53.013][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:53.015][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:53.016][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:53.017][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:53.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:53.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:53.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:53.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:53.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:53.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:53.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:53.035][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2025-04-12 16:05:53.038][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:53.039][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:53.041][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2025-04-12 16:05:53.325][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2025-04-12 16:05:53.617][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:53.620][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2025-04-12 16:05:53.624][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2025-04-12 16:05:53.628][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2025-04-12 16:05:53.630][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:53.631][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:53.633][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:53.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:53.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:53.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:53.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:53.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:53.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:53.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:53.650][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.660][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:53.662][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:53.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:53.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:53.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:53.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:53.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:53.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:53.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:53.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:53.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.700][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:53.701][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:53.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.705][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:53.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:53.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.710][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:53.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:53.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:53.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:53.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:53.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:53.736][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:53.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:53.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:53.745][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:53.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:53.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:53.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:53.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:53.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:53.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:53.802][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-04-12 16:05:53.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:53.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:53.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:53.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:53.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:53.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:53.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:53.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:53.832][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-04-12 16:05:53.833][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:53.835][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2025-04-12 16:05:53.836][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:53.838][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:53.839][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:53.840][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:53.841][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:53.843][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:53.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:53.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:53.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:53.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:53.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:53.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:53.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:53.859][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2025-04-12 16:05:53.862][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:53.864][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:53.865][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2025-04-12 16:05:54.156][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2025-04-12 16:05:54.444][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:54.447][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2025-04-12 16:05:54.451][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2025-04-12 16:05:54.455][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2025-04-12 16:05:54.457][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:54.458][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:54.460][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:54.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:54.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:54.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:54.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:54.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:54.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:54.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:54.477][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.487][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:54.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:54.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.509][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:54.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:54.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:54.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:54.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:54.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:54.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:54.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:54.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:54.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:54.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:54.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:54.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:54.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.544][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:54.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:54.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:54.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.564][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:54.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:54.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.574][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:54.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.579][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:54.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:54.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:54.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:54.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:54.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:54.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:54.642][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-04-12 16:05:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:54.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:54.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:54.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:54.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:54.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:54.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:54.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:54.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:54.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:54.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:54.671][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-04-12 16:05:54.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:54.675][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2025-04-12 16:05:54.676][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:54.678][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:54.679][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:54.680][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:54.681][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:54.682][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:54.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:54.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:54.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:54.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:54.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:54.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:54.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:54.699][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2025-04-12 16:05:54.702][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:54.704][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:54.705][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2025-04-12 16:05:54.986][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2025-04-12 16:05:55.270][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:55.273][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2025-04-12 16:05:55.278][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2025-04-12 16:05:55.281][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2025-04-12 16:05:55.283][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:55.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:55.286][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:55.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:55.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:55.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:55.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:55.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:55.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:55.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:55.304][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.314][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:55.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:55.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:55.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:55.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.334][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:55.335][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:55.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:55.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:55.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:55.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:55.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:55.355][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:55.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.358][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:55.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:55.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.363][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:55.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:55.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.378][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:55.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:55.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.388][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:55.389][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:55.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:55.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.398][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:55.399][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:55.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:55.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:55.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:55.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:55.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:55.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:55.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:55.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:55.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:55.456][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-04-12 16:05:55.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:55.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:55.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:55.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:55.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:55.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:55.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:55.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:55.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:55.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:55.497][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-04-12 16:05:55.498][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:55.500][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2025-04-12 16:05:55.501][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:55.503][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:55.504][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:55.505][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:55.506][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:55.508][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:55.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:55.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:55.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:55.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:55.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:55.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:55.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:55.524][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2025-04-12 16:05:55.527][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:55.529][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:55.530][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2025-04-12 16:05:55.813][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2025-04-12 16:05:56.102][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:56.105][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2025-04-12 16:05:56.109][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2025-04-12 16:05:56.112][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2025-04-12 16:05:56.114][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:56.116][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:56.117][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:56.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:56.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:56.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:56.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:56.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:56.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:56.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:56.135][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.145][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:56.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:56.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:56.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:56.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:56.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:56.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:56.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.174][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:56.175][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:56.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.184][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:56.185][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:56.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.189][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:56.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:56.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.209][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:56.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:56.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.219][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:56.220][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:56.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:56.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:56.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:56.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:56.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:56.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:56.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:56.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:56.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:56.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:56.286][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-04-12 16:05:56.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:56.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:56.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:56.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:56.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:56.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:56.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:56.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:56.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:56.316][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-04-12 16:05:56.317][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:56.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2025-04-12 16:05:56.321][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:56.322][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:56.323][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:56.325][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:56.326][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:56.327][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:56.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:56.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:56.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:56.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:56.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:56.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:56.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:56.344][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2025-04-12 16:05:56.347][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:56.348][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:56.350][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2025-04-12 16:05:56.629][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2025-04-12 16:05:56.910][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:56.913][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2025-04-12 16:05:56.917][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2025-04-12 16:05:56.920][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2025-04-12 16:05:56.922][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:56.924][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:56.925][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:56.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:56.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:56.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:56.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:56.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:56.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:56.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:56.942][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:56.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:56.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.952][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:56.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:56.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:56.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:56.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.962][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:56.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:56.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:56.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:56.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:56.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:56.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:56.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:56.983][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:56.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.987][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:56.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:56.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:56.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:56.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:56.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.010][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:57.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:57.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.031][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:57.033][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:57.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.043][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:57.044][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:57.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:57.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:57.101][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-04-12 16:05:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:57.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:57.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:57.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:57.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:57.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:57.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:57.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:57.130][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-04-12 16:05:57.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:57.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2025-04-12 16:05:57.135][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:57.136][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:57.138][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:57.139][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:57.140][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:57.141][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:57.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:57.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:57.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:57.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:57.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:57.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:57.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:57.159][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2025-04-12 16:05:57.162][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:57.163][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:57.165][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2025-04-12 16:05:57.452][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2025-04-12 16:05:57.733][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:57.736][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2025-04-12 16:05:57.740][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2025-04-12 16:05:57.743][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2025-04-12 16:05:57.746][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:57.747][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:57.748][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:57.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:57.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:57.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:57.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:57.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:57.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:57.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:57.765][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.775][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:57.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:57.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.785][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:57.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:57.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:57.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:57.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:57.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:57.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:57.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:57.806][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:57.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.810][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:57.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:57.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.829][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:57.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:57.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.839][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:57.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:57.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:57.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:57.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.853][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:57.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:57.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:57.907][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-04-12 16:05:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:57.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:57.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:57.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:57.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:57.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:57.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:57.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:57.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:57.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:57.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:57.937][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-04-12 16:05:57.938][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:57.940][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2025-04-12 16:05:57.942][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:57.943][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:57.945][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:57.946][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:57.947][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:57.948][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:57.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:57.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:57.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:57.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:57.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:57.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:57.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:57.965][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2025-04-12 16:05:57.968][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:57.970][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:57.971][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2025-04-12 16:05:58.254][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2025-04-12 16:05:58.540][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:58.543][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2025-04-12 16:05:58.548][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2025-04-12 16:05:58.552][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2025-04-12 16:05:58.554][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:58.556][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:58.557][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:58.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:58.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:58.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:58.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:58.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:58.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:58.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:58.586][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.597][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:58.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:58.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:58.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:58.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:58.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:58.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:58.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:58.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:58.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:58.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:58.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:58.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:58.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.642][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:58.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:58.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.646][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:58.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:58.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.661][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:58.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:58.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:58.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.671][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:58.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:58.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:58.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:58.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:58.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:58.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:58.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:58.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:58.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:58.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:58.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:58.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:58.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:58.738][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-04-12 16:05:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:58.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:58.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:58.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:58.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:58.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:58.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:58.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:58.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:58.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:58.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:58.767][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-04-12 16:05:58.768][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:58.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2025-04-12 16:05:58.772][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:58.773][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:58.775][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:58.776][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:58.777][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:58.778][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:58.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:58.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:58.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:58.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:58.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:58.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:58.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:58.795][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2025-04-12 16:05:58.798][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:58.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:58.801][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2025-04-12 16:05:59.084][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2025-04-12 16:05:59.370][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:05:59.373][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2025-04-12 16:05:59.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2025-04-12 16:05:59.381][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2025-04-12 16:05:59.383][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:05:59.384][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:05:59.386][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:05:59.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:59.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:59.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:59.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:59.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:59.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:59.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:05:59.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.412][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:59.413][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:59.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:05:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:05:59.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:59.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:59.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:05:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:05:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.431][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:59.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:59.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:05:59.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:05:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:59.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:59.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:05:59.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:05:59.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:59.452][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:05:59.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.455][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:59.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:59.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.460][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:05:59.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:05:59.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.475][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:59.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:59.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:05:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:05:59.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.485][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:59.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:59.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:05:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:05:59.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:59.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:59.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:05:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:05:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:59.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:59.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:05:59.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:05:59.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:05:59.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:05:59.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:59.562][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-04-12 16:05:59.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:05:59.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:05:59.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:05:59.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:05:59.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:59.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:59.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:59.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:59.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:59.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:59.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:59.592][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-04-12 16:05:59.593][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:05:59.595][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2025-04-12 16:05:59.597][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:05:59.598][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:05:59.599][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:05:59.600][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:05:59.602][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:05:59.603][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:05:59.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:05:59.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:05:59.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:05:59.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:05:59.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:05:59.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:05:59.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:05:59.620][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2025-04-12 16:05:59.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:05:59.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:05:59.625][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2025-04-12 16:05:59.910][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2025-04-12 16:06:00.191][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:00.194][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2025-04-12 16:06:00.198][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2025-04-12 16:06:00.201][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2025-04-12 16:06:00.203][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:00.205][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:00.206][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:00.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:00.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:00.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:00.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:00.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:00.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:00.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:00.223][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:00.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:00.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:00.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.243][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:00.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:00.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:00.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:00.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:00.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:00.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:00.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:00.274][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:00.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.276][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.277][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:00.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:00.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:00.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:00.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.297][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:00.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:00.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:00.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.307][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:00.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:00.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:00.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:00.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:00.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:00.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:00.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:00.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:00.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:00.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:00.374][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-04-12 16:06:00.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:00.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:00.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:00.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:00.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:00.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:00.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:00.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:00.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:00.403][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-04-12 16:06:00.404][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:00.406][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2025-04-12 16:06:00.408][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:00.409][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:00.410][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:00.411][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:00.413][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:00.414][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:00.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:00.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:00.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:00.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:00.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:00.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:00.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:00.430][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2025-04-12 16:06:00.434][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:00.435][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:00.436][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2025-04-12 16:06:00.725][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2025-04-12 16:06:01.020][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:01.023][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2025-04-12 16:06:01.029][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2025-04-12 16:06:01.032][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2025-04-12 16:06:01.034][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:01.036][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:01.037][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:01.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:01.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:01.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:01.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:01.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:01.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:01.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:01.054][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.064][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:01.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:01.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:01.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:01.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:01.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:01.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:01.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:01.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:01.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:01.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:01.105][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:01.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.120][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:01.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:01.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:01.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.131][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.132][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.141][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:01.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:01.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:01.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:01.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.151][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:01.152][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:01.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:01.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.161][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:01.162][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:01.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:01.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:01.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:01.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:01.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:01.219][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-04-12 16:06:01.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:01.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:01.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:01.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:01.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:01.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:01.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:01.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:01.248][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-04-12 16:06:01.249][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:01.251][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2025-04-12 16:06:01.253][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:01.254][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:01.255][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:01.257][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:01.258][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:01.259][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:01.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:01.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:01.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:01.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:01.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:01.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:01.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:01.276][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2025-04-12 16:06:01.279][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:01.280][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:01.282][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2025-04-12 16:06:01.582][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2025-04-12 16:06:01.873][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:01.876][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2025-04-12 16:06:01.881][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2025-04-12 16:06:01.884][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2025-04-12 16:06:01.886][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:01.888][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:01.889][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:01.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:01.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:01.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:01.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:01.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:01.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:01.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:01.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:01.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.916][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:01.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:01.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.925][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:01.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:01.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:01.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:01.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:01.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:01.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:01.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:01.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:01.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:01.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:01.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:01.956][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:01.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.960][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:01.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:01.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:01.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:01.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.979][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:01.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:01.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:01.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:01.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.989][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:01.990][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:01.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:01.999][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:02.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:02.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:02.056][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-04-12 16:06:02.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:02.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:02.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:02.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:02.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:02.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:02.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:02.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:02.085][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-04-12 16:06:02.087][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:02.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2025-04-12 16:06:02.090][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:02.092][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:02.093][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:02.094][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:02.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:02.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:02.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:02.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:02.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:02.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:02.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:02.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:02.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:02.125][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2025-04-12 16:06:02.129][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:02.130][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:02.132][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2025-04-12 16:06:02.416][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2025-04-12 16:06:02.719][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:02.722][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2025-04-12 16:06:02.726][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2025-04-12 16:06:02.730][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2025-04-12 16:06:02.732][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:02.733][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:02.735][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:02.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:02.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:02.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:02.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:02.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:02.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:02.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:02.752][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.762][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:02.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:02.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.765][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:02.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:02.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:02.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:02.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.781][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:02.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:02.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:02.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:02.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:02.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:02.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:02.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:02.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.806][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:02.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:02.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.811][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:02.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:02.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.816][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.817][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:02.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:02.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:02.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:02.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.836][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:02.837][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:02.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:02.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:02.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:02.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:02.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:02.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:02.903][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-04-12 16:06:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:02.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:02.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:02.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:02.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:02.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:02.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:02.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:02.933][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-04-12 16:06:02.934][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:02.936][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2025-04-12 16:06:02.938][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:02.939][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:02.940][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:02.942][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:02.943][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:02.944][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:02.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:02.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:02.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:02.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:02.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:02.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:02.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:02.961][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2025-04-12 16:06:02.964][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:02.965][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:02.966][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2025-04-12 16:06:03.248][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2025-04-12 16:06:03.540][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:03.552][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2025-04-12 16:06:03.558][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2025-04-12 16:06:03.562][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2025-04-12 16:06:03.564][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:03.565][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:03.567][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:03.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:03.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:03.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:03.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:03.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:03.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:03.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:03.584][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.587][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.593][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:03.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:03.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:03.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.603][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:03.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:03.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:03.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:03.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:03.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:03.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:03.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:03.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:03.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:03.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:03.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:03.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:03.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.637][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:03.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:03.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.642][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:03.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:03.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.657][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:03.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:03.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:03.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.667][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:03.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:03.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.670][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:03.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:03.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:03.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:03.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:03.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:03.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:03.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:03.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:03.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:03.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:03.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:03.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:03.747][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-04-12 16:06:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:03.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:03.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:03.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:03.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:03.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:03.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:03.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:03.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:03.776][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-04-12 16:06:03.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:03.780][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2025-04-12 16:06:03.781][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:03.783][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:03.784][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:03.785][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:03.786][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:03.787][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:03.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:03.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:03.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:03.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:03.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:03.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:03.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:03.804][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2025-04-12 16:06:03.807][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:03.808][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:03.810][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2025-04-12 16:06:04.100][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2025-04-12 16:06:04.408][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:04.410][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2025-04-12 16:06:04.415][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2025-04-12 16:06:04.473][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2025-04-12 16:06:04.476][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:04.477][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:04.479][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:04.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:04.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:04.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:04.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:04.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:04.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:04.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:04.497][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.507][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:04.508][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:04.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:04.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:04.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.517][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:04.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:04.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:04.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:04.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:04.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:04.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:04.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:04.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:04.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:04.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:04.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.551][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:04.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:04.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.556][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:04.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:04.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.571][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:04.572][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:04.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:04.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.581][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:04.582][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:04.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.586][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:04.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:04.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:04.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:04.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:04.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:04.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:04.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:04.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:04.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:04.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:04.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:04.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:04.649][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-04-12 16:06:04.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:04.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:04.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:04.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:04.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:04.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:04.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:04.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:04.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:04.678][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-04-12 16:06:04.680][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:04.681][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2025-04-12 16:06:04.683][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:04.684][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:04.686][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:04.687][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:04.688][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:04.689][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:04.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:04.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:04.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:04.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:04.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:04.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:04.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:04.706][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2025-04-12 16:06:04.709][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:04.711][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:04.712][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2025-04-12 16:06:05.002][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2025-04-12 16:06:05.370][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:05.372][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2025-04-12 16:06:05.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2025-04-12 16:06:05.380][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2025-04-12 16:06:05.382][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:05.384][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:05.385][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:05.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:05.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:05.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:05.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:05.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:05.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:05.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:05.402][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.412][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:05.438][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:05.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:05.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.452][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:05.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:05.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:05.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:05.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.462][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:05.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:05.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:05.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.472][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:05.473][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:05.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.482][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:05.483][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:05.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.487][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:05.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:05.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.492][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:05.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:05.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.507][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:05.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:05.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:05.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:05.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.517][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:05.519][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:05.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:05.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:05.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.527][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:05.529][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:05.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:05.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:05.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:05.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:05.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:05.585][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-04-12 16:06:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:05.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:05.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:05.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:05.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:05.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:05.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:05.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:05.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:05.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:05.615][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-04-12 16:06:05.616][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:05.618][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2025-04-12 16:06:05.619][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:05.621][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:05.622][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:05.623][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:05.625][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:05.626][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:05.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:05.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:05.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:05.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:05.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:05.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:05.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:05.643][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2025-04-12 16:06:05.646][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:05.647][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:05.649][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2025-04-12 16:06:05.939][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2025-04-12 16:06:06.224][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:06.228][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2025-04-12 16:06:06.232][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2025-04-12 16:06:06.236][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2025-04-12 16:06:06.238][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:06.239][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:06.241][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:06.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:06.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:06.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:06.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:06.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:06.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:06.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:06.258][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.268][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:06.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:06.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:06.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.278][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:06.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:06.289][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:06.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:06.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:06.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.307][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:06.309][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:06.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.312][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:06.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:06.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:06.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:06.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.332][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:06.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:06.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:06.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:06.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.342][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:06.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:06.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.352][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:06.353][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:06.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:06.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:06.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:06.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:06.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:06.410][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-04-12 16:06:06.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:06.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:06.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:06.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:06.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:06.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:06.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:06.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:06.450][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-04-12 16:06:06.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:06.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2025-04-12 16:06:06.455][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:06.456][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:06.458][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:06.459][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:06.460][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:06.461][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:06.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:06.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:06.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:06.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:06.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:06.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:06.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:06.478][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2025-04-12 16:06:06.482][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:06.483][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:06.484][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2025-04-12 16:06:06.769][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2025-04-12 16:06:07.051][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:07.054][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2025-04-12 16:06:07.058][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2025-04-12 16:06:07.062][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2025-04-12 16:06:07.064][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:07.065][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:07.067][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:07.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:07.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:07.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:07.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:07.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:07.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:07.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:07.084][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.094][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:07.095][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:07.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.103][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:07.105][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:07.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:07.115][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:07.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:07.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:07.125][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:07.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:07.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:07.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:07.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.138][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:07.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:07.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.144][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:07.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.158][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:07.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:07.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:07.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.169][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:07.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:07.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:07.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.178][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:07.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.182][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:07.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:07.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:07.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:07.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:07.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:07.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:07.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:07.236][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-04-12 16:06:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:07.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:07.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:07.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:07.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:07.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:07.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:07.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:07.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:07.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:07.266][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-04-12 16:06:07.267][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:07.269][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2025-04-12 16:06:07.271][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:07.272][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:07.274][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:07.275][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:07.276][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:07.277][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:07.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:07.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:07.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:07.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:07.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:07.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:07.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:07.294][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2025-04-12 16:06:07.297][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:07.299][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:07.300][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2025-04-12 16:06:07.581][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2025-04-12 16:06:07.871][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:07.874][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2025-04-12 16:06:08.216][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2025-04-12 16:06:08.220][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2025-04-12 16:06:08.222][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:08.224][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:08.225][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:08.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:08.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:08.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:08.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:08.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:08.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:08.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:08.242][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.252][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:08.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:08.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.262][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:08.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:08.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:08.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:08.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:08.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:08.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:08.283][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:08.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:08.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.291][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:08.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:08.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.296][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:08.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:08.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.301][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.327][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:08.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:08.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:08.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:08.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:08.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:08.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:08.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:08.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:08.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:08.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:08.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:08.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:08.404][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-04-12 16:06:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:08.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:08.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:08.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:08.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:08.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:08.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:08.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:08.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:08.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:08.434][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-04-12 16:06:08.435][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:08.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2025-04-12 16:06:08.438][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:08.440][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:08.441][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:08.442][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:08.443][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:08.444][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:08.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:08.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:08.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:08.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:08.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:08.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:08.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:08.461][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2025-04-12 16:06:08.464][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:08.466][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:08.467][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2025-04-12 16:06:08.747][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2025-04-12 16:06:09.039][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:09.042][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2025-04-12 16:06:09.046][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2025-04-12 16:06:09.050][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2025-04-12 16:06:09.052][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:09.053][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:09.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:09.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:09.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:09.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:09.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:09.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:09.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:09.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:09.072][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.074][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.082][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:09.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:09.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:09.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:09.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.092][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:09.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:09.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:09.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:09.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.102][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:09.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:09.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:09.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:09.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.112][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:09.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:09.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:09.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:09.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.122][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:09.123][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:09.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.127][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:09.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:09.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.132][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:09.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:09.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.137][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.147][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:09.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:09.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:09.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:09.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:09.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:09.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:09.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:09.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:09.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:09.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:09.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:09.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:09.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:09.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:09.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:09.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:09.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:09.224][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-04-12 16:06:09.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:09.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:09.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:09.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:09.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:09.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:09.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:09.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:09.254][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-04-12 16:06:09.255][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:09.257][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2025-04-12 16:06:09.259][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:09.260][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:09.261][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:09.263][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:09.264][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:09.265][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:09.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:09.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:09.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:09.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:09.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:09.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:09.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:09.282][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2025-04-12 16:06:09.285][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:09.287][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:09.288][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2025-04-12 16:06:09.584][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2025-04-12 16:06:09.872][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:09.875][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2025-04-12 16:06:09.891][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2025-04-12 16:06:09.895][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2025-04-12 16:06:09.897][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:09.899][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:09.900][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:09.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:09.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:09.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:09.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:09.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:09.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:09.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:09.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:09.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:09.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:09.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:09.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:09.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.937][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:09.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:09.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.941][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:09.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:09.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:09.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:09.958][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:09.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:09.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:09.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.966][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:09.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:09.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.971][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:09.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:09.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:09.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:09.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:09.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.991][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:09.992][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:09.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:09.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.001][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:10.002][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:10.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:10.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:10.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:10.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:10.072][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-04-12 16:06:10.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:10.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:10.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:10.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:10.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:10.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:10.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:10.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:10.101][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-04-12 16:06:10.102][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:10.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2025-04-12 16:06:10.106][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:10.107][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:10.109][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:10.110][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:10.111][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:10.112][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:10.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:10.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:10.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:10.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:10.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:10.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:10.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:10.129][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2025-04-12 16:06:10.132][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:10.133][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:10.135][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2025-04-12 16:06:10.429][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2025-04-12 16:06:10.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:10.738][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2025-04-12 16:06:10.743][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2025-04-12 16:06:10.746][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2025-04-12 16:06:10.748][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:10.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:10.751][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:10.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:10.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:10.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:10.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:10.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:10.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:10.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:10.768][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.778][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:10.779][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:10.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:10.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:10.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.788][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:10.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:10.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:10.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:10.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:10.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:10.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:10.808][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:10.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:10.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:10.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.817][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:10.818][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:10.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:10.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.827][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:10.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:10.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.832][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:10.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:10.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.847][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:10.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:10.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:10.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:10.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:10.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.861][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:10.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:10.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:10.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:10.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:10.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:10.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:10.935][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-04-12 16:06:10.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:10.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:10.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:10.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:10.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:10.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:10.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:10.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:10.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:10.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:10.964][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-04-12 16:06:10.965][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-12 16:06:10.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2025-04-12 16:06:10.969][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-12 16:06:10.970][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-12 16:06:10.972][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-04-12 16:06:10.973][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-04-12 16:06:10.974][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-12 16:06:10.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-12 16:06:10.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:10.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:10.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:10.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:10.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:10.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:10.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:10.992][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2025-04-12 16:06:10.995][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-12 16:06:10.996][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-12 16:06:10.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2025-04-12 16:06:11.286][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2025-04-12 16:06:11.575][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-12 16:06:11.578][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2025-04-12 16:06:11.582][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2025-04-12 16:06:11.585][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2025-04-12 16:06:11.588][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-12 16:06:11.589][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-04-12 16:06:11.591][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-04-12 16:06:11.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:11.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:11.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:11.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:11.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:11.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:11.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:11.608][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.618][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:11.619][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:11.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:11.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:11.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.628][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:11.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:11.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.638][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:11.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:11.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:11.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:11.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:11.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:11.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:11.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.658][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:11.659][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:11.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.663][ef$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:11.664][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:11.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.668][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-04-12 16:06:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.683][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:11.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:11.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:11.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:11.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-04-12 16:06:11.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.703][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:11.704][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:11.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:11.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:11.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:11.760][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-04-12 16:06:11.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:11.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:11.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:11.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:11.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:11.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:11.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:11.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:11.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:11.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:11.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:11.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:11.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:11.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:11.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:11.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:11.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:11.834][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:11.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:11.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:11.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:11.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:11.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:11.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:11.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:11.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:11.861][private$selectFields]
biodb.TRACE[2025-04-12 16:06:11.862][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:11.863][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:11.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:11.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:11.877][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:11.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.883][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:11.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.910][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:06:11.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:11.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:11.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:11.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:11.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:11.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:11.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:11.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:11.936][private$selectFields]
biodb.TRACE[2025-04-12 16:06:11.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:11.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:11.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:11.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:11.952][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:11.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.958][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:11.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.978][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:06:11.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:11.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:11.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:11.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:11.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:11.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:11.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:11.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:11.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:11.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.004][private$selectFields]
biodb.TRACE[2025-04-12 16:06:12.006][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:12.007][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:12.008][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.020][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.025][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:12.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:06:12.042][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:12.044][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:12.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:12.061][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:12.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:12.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-12 16:06:12.068][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:12.071][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-12 16:06:12.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.190][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:12.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.216][private$selectFields]
biodb.TRACE[2025-04-12 16:06:12.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:12.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:12.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.232][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.237][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:12.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.253][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:06:12.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.279][private$selectFields]
biodb.TRACE[2025-04-12 16:06:12.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:12.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:12.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.294][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.300][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:12.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.324][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:06:12.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.350][private$selectFields]
biodb.TRACE[2025-04-12 16:06:12.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:12.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:12.353][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.365][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.371][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:12.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:06:12.388][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:12.389][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:12.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:12.431][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:12.434][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:12.436][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-12 16:06:12.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:12.440][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-12 16:06:12.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.643][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:12.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.670][private$selectFields]
biodb.TRACE[2025-04-12 16:06:12.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:12.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:12.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.685][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.691][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:12.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.707][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:06:12.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.741][private$selectFields]
biodb.TRACE[2025-04-12 16:06:12.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:12.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:12.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.757][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.763][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:12.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:06:12.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.805][private$selectFields]
biodb.TRACE[2025-04-12 16:06:12.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:12.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:12.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.820][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:12.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.826][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:12.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:12.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.842][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-04-12 16:06:12.843][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:12.844][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:12.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:12.862][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:12.866][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:12.867][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2025-04-12 16:06:12.869][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:12.872][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2025-04-12 16:06:12.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:12.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:12.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:12.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:12.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:12.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:12.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:12.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:12.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:12.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:12.998][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:12.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.024][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.025][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.039][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.045][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-04-12 16:06:13.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.086][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.088][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.090][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.109][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:06:13.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.151][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.161][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.175][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.197][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-04-12 16:06:13.198][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:13.199][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:13.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:13.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:13.221][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:13.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2025-04-12 16:06:13.224][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:13.226][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2025-04-12 16:06:13.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.370][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:13.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.396][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.405][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.411][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.417][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.433][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-04-12 16:06:13.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.458][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.474][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.480][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-04-12 16:06:13.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.522][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.537][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.543][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-04-12 16:06:13.560][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:13.561][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:13.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:13.615][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:13.619][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:13.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:06:13.622][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:13.624][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:06:13.628][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:13.631][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:13.633][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:06:13.634][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:13.636][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:06:13.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.724][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:13.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.751][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.766][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.772][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:06:13.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.814][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.830][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.835][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.851][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:06:13.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.877][private$selectFields]
biodb.TRACE[2025-04-12 16:06:13.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:13.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:13.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.893][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:13.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.898][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:13.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:06:13.915][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:13.916][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:13.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:13.934][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:13.938][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:13.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:06:13.941][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:13.943][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:06:13.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:13.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:13.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:13.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:13.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:13.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:13.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:13.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:13.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:13.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:13.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.042][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:14.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.068][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.070][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.071][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.083][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.084][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.090][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.105][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:06:14.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.131][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.134][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.147][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.152][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:06:14.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.194][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.202][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.209][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.215][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.231][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:06:14.232][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:14.233][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:14.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:14.251][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:14.254][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:14.256][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:06:14.257][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:14.260][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:06:14.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:14.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.377][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.398][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:14.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:06:14.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.450][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.453][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.466][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.472][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-04-12 16:06:14.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.514][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.529][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.535][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:14.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-04-12 16:06:14.552][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:14.553][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:14.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:14.597][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:14.600][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:14.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2025-04-12 16:06:14.603][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:14.606][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2025-04-12 16:06:14.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:14.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:14.834][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:14.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.869][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.884][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:14.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.906][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-04-12 16:06:14.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.931][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.946][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.952][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-04-12 16:06:14.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:14.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:14.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:14.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:14.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:14.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:14.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:14.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:14.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:14.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.995][private$selectFields]
biodb.TRACE[2025-04-12 16:06:14.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:14.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:14.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:14.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.001][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:15.010][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:15.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.016][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:15.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-04-12 16:06:15.033][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:15.034][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:15.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:15.052][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:15.055][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:15.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2025-04-12 16:06:15.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:15.061][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2025-04-12 16:06:15.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:15.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:15.940][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:15.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:15.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:15.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:15.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:15.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:15.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:15.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:15.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:15.966][private$selectFields]
biodb.TRACE[2025-04-12 16:06:15.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:15.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:15.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:15.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.979][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:15.981][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:15.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.987][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:15.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:15.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-04-12 16:06:16.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.029][private$selectFields]
biodb.TRACE[2025-04-12 16:06:16.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:16.032][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:16.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.045][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.051][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-04-12 16:06:16.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.093][private$selectFields]
biodb.TRACE[2025-04-12 16:06:16.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:16.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:16.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.117][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.123][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-04-12 16:06:16.140][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:16.142][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:16.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:16.159][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:16.163][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:16.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-04-12 16:06:16.166][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:16.169][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-04-12 16:06:16.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:16.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:16.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:16.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:16.289][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:16.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.316][private$selectFields]
biodb.TRACE[2025-04-12 16:06:16.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:16.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:16.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.331][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.337][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:16.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-04-12 16:06:16.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.379][private$selectFields]
biodb.TRACE[2025-04-12 16:06:16.380][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:16.381][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:16.382][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.394][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.400][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:16.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-04-12 16:06:16.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.441][private$selectFields]
biodb.TRACE[2025-04-12 16:06:16.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:16.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:16.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.456][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-04-12 16:06:16.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.462][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-04-12 16:06:16.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.482][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-04-12 16:06:16.484][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:16.486][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:06:16.524][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:16.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:16.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.531][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:16.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:16.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.538][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:16.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:16.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:06:16.561][biodb::testThat]
biodb.INFO [2025-04-12 16:06:16.563][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-04-12 16:06:16.564][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-12 16:06:16.565][biodb::testThat]
biodb.TRACE[2025-04-12 16:06:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:06:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:06:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.575][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:06:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:06:16.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-12 16:06:16.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-12 16:06:16.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:16.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:16.660][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:16.663][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:16.665][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:06:16.667][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:16.669][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:06:16.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:16.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:16.705][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:16.706][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:06:16.708][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:16.710][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:06:16.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:16.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:16.769][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:16.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:16.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:16.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:16.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:16.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:16.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:16.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:16.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:16.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:16.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:16.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:16.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:16.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.820][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:16.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:16.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:16.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:16.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:16.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:16.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:16.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:16.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:16.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:16.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.848][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:16.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.872][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:16.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:16.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:16.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:16.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:16.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:16.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:16.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:16.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.900][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:16.901][private$selectFields]
biodb.TRACE[2025-04-12 16:06:16.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:16.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:16.905][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:16.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:16.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:16.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.911][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:16.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:16.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.920][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:16.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:16.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:16.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:16.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:16.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:16.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.934][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:16.935][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:16.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.938][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:16.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:16.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.948][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:16.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:16.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.951][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.953][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:16.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:16.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:16.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:16.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:16.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:16.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.976][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:16.978][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:16.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:16.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.986][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:16.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:16.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:16.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:16.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:16.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:16.996][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:16.997][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:16.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.006][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.016][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.030][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:17.031][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:17.032][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.037][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.045][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.053][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.068][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.076][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.077][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.081][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.086][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.087][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.091][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:17.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-12 16:06:17.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:17.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:17.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:17.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:17.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:17.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:17.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:17.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.329][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.334][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.395][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:17.396][private$selectFields]
biodb.TRACE[2025-04-12 16:06:17.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:17.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:17.400][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:17.401][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.406][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.415][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.416][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.434][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.440][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.444][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.448][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.452][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.453][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.454][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.457][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.461][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.462][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.475][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.477][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.490][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.501][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.504][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.509][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.510][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.514][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:17.515][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:17.516][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.517][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.521][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.522][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.525][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.530][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.531][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.534][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.545][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.548][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.553][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.558][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.559][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.562][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.568][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.572][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.664][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.761][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-12 16:06:17.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:17.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:17.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:17.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:17.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:17.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:17.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:17.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.833][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.890][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:17.892][private$selectFields]
biodb.TRACE[2025-04-12 16:06:17.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:17.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:17.895][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:17.896][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.901][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.902][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.910][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.929][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.939][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.940][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.943][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:17.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:17.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.947][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.948][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:17.949][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:17.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.953][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:17.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:17.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.956][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.958][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:17.959][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:17.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:17.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.967][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:17.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:17.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:17.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:17.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.976][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:17.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.981][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.982][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:17.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.985][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:17.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:17.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:17.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:17.997][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:17.999][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.004][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.015][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:18.016][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:18.018][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.022][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.032][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.041][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.046][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.055][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.060][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.069][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.200][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:18.244][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:18.245][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:18.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:18.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:18.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:18.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:18.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:18.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:18.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:18.264][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:18.267][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:18.269][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:06:18.271][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:18.273][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:06:18.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:18.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:18.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:18.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:18.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:18.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:18.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:18.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:18.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:18.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:18.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:18.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:18.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:18.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:18.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:18.337][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:18.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:06:18.340][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:18.342][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:06:18.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:18.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:18.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:18.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:18.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:18.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:18.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:18.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:18.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:18.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:18.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:18.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:18.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:18.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:18.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:18.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:18.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:18.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:18.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:18.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:18.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:18.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:18.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:18.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:18.430][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:18.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:18.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:18.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:18.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:18.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:18.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:18.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.508][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.531][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.745][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:18.746][private$selectFields]
biodb.TRACE[2025-04-12 16:06:18.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:18.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:18.749][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:18.750][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.755][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.764][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.773][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.778][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.779][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.783][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.792][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.793][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.796][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.805][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.810][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.819][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.838][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.847][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.851][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.861][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:18.862][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:18.863][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.867][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.869][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.881][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.882][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:18.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.895][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.896][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:18.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.898][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.899][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:18.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.904][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:18.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.908][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:18.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:18.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.912][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:18.914][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:18.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.917][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:18.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:18.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:18.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:18.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:18.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:18.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:18.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:18.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:18.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:18.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:18.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:18.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.055][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:19.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:19.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:19.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:19.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:19.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:19.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:19.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:19.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.119][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.199][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.227][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:19.228][private$selectFields]
biodb.TRACE[2025-04-12 16:06:19.229][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:19.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:19.231][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:19.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.237][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.246][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.264][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.273][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.278][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.291][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.301][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.310][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.314][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.315][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.319][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.328][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.329][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.342][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:19.343][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:19.344][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.345][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.349][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.350][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.358][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.376][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.380][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.385][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.389][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.399][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.490][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.542][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:19.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:19.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:19.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:19.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:19.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:19.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:19.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:19.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.655][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.679][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.706][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:19.707][private$selectFields]
biodb.TRACE[2025-04-12 16:06:19.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:19.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:19.711][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:19.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.717][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.718][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.726][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.727][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.730][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.732][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.749][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.753][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.758][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.772][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.773][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.781][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.796][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:19.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.799][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.809][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.813][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.818][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.822][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:19.824][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:19.825][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.826][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.829][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.839][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.840][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.847][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.852][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.862][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.863][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:19.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.866][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:19.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:19.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:19.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:19.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.880][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:19.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:19.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:19.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:19.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:19.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:19.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:19.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:20.056][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:20.057][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:20.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:20.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:20.078][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:20.080][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:06:20.081][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:20.083][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:06:20.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.306][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:20.310][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:20.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:06:20.313][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:20.316][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:06:20.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:20.407][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:20.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.479][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.535][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:20.536][private$selectFields]
biodb.TRACE[2025-04-12 16:06:20.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:20.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:20.539][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:20.541][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.545][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.546][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.554][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.560][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.568][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.582][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.583][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.587][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.593][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.596][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.599][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.601][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.602][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.619][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.628][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.637][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.639][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.642][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.647][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.648][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.651][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:20.653][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:20.654][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.667][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.677][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.678][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.681][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.686][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.692][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.695][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.696][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.700][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.708][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.709][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:20.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.725][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.800][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.843][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.847][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:20.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:20.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:20.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:20.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-12 16:06:20.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:20.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:20.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:20.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:20.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:20.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:20.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:20.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:20.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.915][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.919][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:20.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:20.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:20.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:20.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:20.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:20.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:20.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:20.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:20.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.017][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:21.019][private$selectFields]
biodb.TRACE[2025-04-12 16:06:21.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:21.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:21.022][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:21.023][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.028][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.037][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.051][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.052][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.055][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.065][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.066][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.069][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.071][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.079][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.082][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.083][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.092][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.111][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.120][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.125][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.131][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.134][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:21.135][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:21.137][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.141][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.168][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.169][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.175][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.177][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.178][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.183][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.192][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.212][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.310][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-12 16:06:21.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:21.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:21.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:21.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:21.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:21.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:21.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:21.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.481][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:21.482][private$selectFields]
biodb.TRACE[2025-04-12 16:06:21.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:21.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:21.485][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:21.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.491][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.500][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.519][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.523][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.528][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.533][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.547][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.551][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.560][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:21.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.578][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.584][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.587][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.589][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.592][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.597][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.598][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.601][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:21.602][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:21.603][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.608][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.617][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.618][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.629][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.631][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.640][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.641][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.644][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.649][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.650][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.653][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:21.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:21.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:21.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:21.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.767][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.776][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:21.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:21.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:21.814][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:21.816][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:21.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:21.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:21.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:21.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:21.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:21.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:21.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:21.839][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:21.842][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:21.843][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-04-12 16:06:21.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:21.847][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-04-12 16:06:21.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:21.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:21.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:21.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:21.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:21.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:21.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:21.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:21.878][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:21.882][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:21.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-04-12 16:06:21.885][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:21.887][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-04-12 16:06:21.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:21.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:21.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:21.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:21.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:21.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:21.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:21.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:21.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:21.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:21.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:21.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:21.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:21.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:21.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:21.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:21.951][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:21.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:21.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:21.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:21.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:21.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:21.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:21.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:21.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:21.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:21.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:21.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.022][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.026][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.077][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.082][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.087][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:22.088][private$selectFields]
biodb.TRACE[2025-04-12 16:06:22.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:22.090][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:22.091][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:22.092][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.097][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.106][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.110][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.115][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.121][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.124][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.133][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.138][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.144][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.147][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.148][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.152][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.156][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.157][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.165][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.179][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.180][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.184][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.188][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.193][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.194][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.196][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.207][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.208][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.211][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:22.213][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:22.214][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.218][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.219][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.227][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.237][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.241][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.250][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.255][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.260][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.264][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:22.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.289][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.432][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-04-12 16:06:22.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:22.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:22.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:22.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:22.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:22.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:22.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.568][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:22.569][private$selectFields]
biodb.TRACE[2025-04-12 16:06:22.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:22.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:22.572][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:22.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.578][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.579][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.598][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.601][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.602][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.606][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.615][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.619][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.624][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.629][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.630][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.632][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.633][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.638][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.639][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.647][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.653][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.662][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.665][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.675][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.679][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.689][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.690][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:22.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.693][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:22.695][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:22.696][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.700][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.702][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.710][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.711][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.714][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.728][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.743][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.747][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.748][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.751][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.756][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:22.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.772][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.843][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.852][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:22.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:22.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:22.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:22.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:22.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-12 16:06:22.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:22.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:22.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:22.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:22.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:22.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:22.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:22.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:22.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:22.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:22.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:22.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:22.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:22.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:22.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:22.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.073][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:23.074][private$selectFields]
biodb.TRACE[2025-04-12 16:06:23.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:23.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:23.078][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:23.079][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.084][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.093][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.107][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.112][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.121][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.126][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.135][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.140][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.142][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.144][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.145][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.150][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.151][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.153][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.159][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.167][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.177][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.178][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.186][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.191][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.200][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.201][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.205][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:23.206][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:23.207][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.211][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.213][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.221][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.243][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.244][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.248][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.252][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.253][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.257][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:23.419][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:23.420][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:23.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:23.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:23.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:23.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:23.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:23.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:23.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:23.438][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:23.441][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:23.443][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-04-12 16:06:23.445][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:23.447][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-04-12 16:06:23.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:23.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:23.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:23.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:23.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:23.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:23.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:23.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:23.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:23.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:23.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:23.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:23.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:23.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:23.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:23.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:23.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:23.510][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:23.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-04-12 16:06:23.513][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:23.515][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-04-12 16:06:23.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:23.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:23.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:23.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:23.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:23.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:23.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:23.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:23.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:23.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:23.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:23.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:23.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:23.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:23.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:23.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:23.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:23.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:23.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:23.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:23.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:23.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:23.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:23.606][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:23.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:23.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:23.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:23.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:23.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:23.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:23.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:23.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.630][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.741][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:23.742][private$selectFields]
biodb.TRACE[2025-04-12 16:06:23.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:23.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:23.745][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:23.747][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.751][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.752][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.765][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.774][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.775][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.779][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.788][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.793][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.797][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.798][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.802][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.803][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.806][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.811][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.820][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.838][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.848][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.852][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.857][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.858][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.861][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.863][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:23.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.866][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:23.867][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:23.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.873][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.874][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:23.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.896][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:23.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.902][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:23.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:23.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.910][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.911][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:23.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:23.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:23.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:23.920][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:23.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.924][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:23.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:23.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:23.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:23.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:23.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:23.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:24.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:24.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:24.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:24.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:24.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:24.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:24.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:24.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.206][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.243][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:24.244][private$selectFields]
biodb.TRACE[2025-04-12 16:06:24.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:24.246][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:24.247][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:24.248][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.253][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.262][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.281][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.282][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.290][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.294][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.299][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.300][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.304][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.305][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.308][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.321][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.322][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.332][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.333][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.338][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.341][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.346][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.355][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.356][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.369][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.370][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.373][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:24.374][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:24.376][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.380][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.389][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.407][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.421][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.430][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:24.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.446][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.450][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.521][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.558][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:24.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:24.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:24.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:24.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:24.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:24.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:24.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:24.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.630][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.710][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.748][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:24.749][private$selectFields]
biodb.TRACE[2025-04-12 16:06:24.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:24.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:24.752][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:24.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.758][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.759][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.767][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.773][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.781][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.782][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.786][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.790][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.791][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.795][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.796][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.799][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.804][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.805][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.809][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.810][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.813][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.818][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.819][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.827][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.841][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.842][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:24.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.845][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.855][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.856][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.864][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.869][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.870][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:24.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.873][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:24.874][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:24.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.880][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.889][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.893][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:24.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.903][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:24.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:24.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.912][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.914][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:24.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.917][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:24.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:24.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:24.923][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:24.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.926][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:24.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:24.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:24.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:24.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:24.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:24.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:24.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:24.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:24.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.092][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:25.094][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:25.095][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:25.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:25.113][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:25.122][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:25.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-04-12 16:06:25.125][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:25.128][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-04-12 16:06:25.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.353][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:25.357][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:25.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-04-12 16:06:25.360][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:25.362][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-04-12 16:06:25.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:25.449][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:25.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:25.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:25.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:25.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:25.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.521][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:25.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:25.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:25.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:25.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.592][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:25.593][private$selectFields]
biodb.TRACE[2025-04-12 16:06:25.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:25.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:25.596][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:25.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.611][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:25.612][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:25.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.615][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:25.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:25.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.625][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.626][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.638][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.639][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.643][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.647][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.652][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:25.653][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:25.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.656][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.661][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.662][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:25.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:25.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:25.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:25.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.689][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.698][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.699][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.702][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.712][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:25.713][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:25.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.716][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:25.717][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:25.719][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.723][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.732][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:25.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:25.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:25.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:25.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.742][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.743][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.746][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.747][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.751][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.760][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.764][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.766][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.769][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.774][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:25.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:25.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:25.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:25.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:25.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:25.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:25.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:25.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:25.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:25.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:25.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:25.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:25.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.865][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.903][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:25.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:25.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-04-12 16:06:25.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:25.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:25.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:25.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:25.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:25.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:25.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:25.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:25.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:25.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:25.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:25.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:25.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:25.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.035][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.096][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:26.097][private$selectFields]
biodb.TRACE[2025-04-12 16:06:26.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:26.099][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:26.100][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:26.101][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.106][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.107][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.110][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.115][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.134][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.143][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.147][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.152][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.156][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.158][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.161][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.165][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.166][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.167][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.175][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.183][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.193][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.202][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.203][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.207][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.211][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.216][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.217][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.221][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:26.222][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:26.223][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.227][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.237][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.250][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.252][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.260][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.264][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.273][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.292][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-04-12 16:06:26.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:26.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:26.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:26.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:26.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:26.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:26.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:26.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.488][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.539][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.562][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.599][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:26.600][private$selectFields]
biodb.TRACE[2025-04-12 16:06:26.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:26.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:26.604][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:26.605][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.610][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.614][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.637][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.641][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.646][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.648][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.651][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.657][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.660][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.661][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.665][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.670][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.671][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.679][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.680][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.685][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.692][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:26.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.697][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.702][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.707][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.711][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.721][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.722][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:26.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.725][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:26.726][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:26.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.732][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.734][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.742][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.761][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.766][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.770][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.771][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.781][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.784][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:26.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:26.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:26.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:26.946][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:26.947][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:06:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:26.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:27.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:27.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:27.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:27.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:27.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:27.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:27.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:27.031][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:27.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:27.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:06:27.038][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:27.040][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:06:27.043][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:27.047][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:27.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:06:27.050][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:27.052][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:06:27.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:27.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:27.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:27.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:27.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:27.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:27.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:27.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:27.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:27.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:27.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:27.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:27.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:27.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:27.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:27.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:27.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:27.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:27.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:27.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:27.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:27.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:27.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:27.139][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:27.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:27.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:27.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:27.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:27.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:27.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:27.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.288][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:27.289][private$selectFields]
biodb.TRACE[2025-04-12 16:06:27.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:27.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:27.293][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:27.294][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.299][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.300][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.308][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.322][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.323][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.326][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.335][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.345][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.346][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.349][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.354][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.363][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.379][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.387][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.391][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.393][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.396][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.405][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:27.407][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:27.408][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.412][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.440][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.450][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.454][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.459][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.464][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:27.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.484][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.552][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.556][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:27.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:27.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:27.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:27.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:27.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:27.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:27.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:27.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.720][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.766][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.776][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:27.777][private$selectFields]
biodb.TRACE[2025-04-12 16:06:27.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:27.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:27.780][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:27.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.786][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.796][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.814][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.824][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.828][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.834][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.838][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.842][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.843][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.851][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.861][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.870][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.879][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.881][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.884][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.893][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:27.894][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:27.896][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.900][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.901][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.909][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:27.911][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:27.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.914][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:27.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:27.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:27.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.923][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:27.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.928][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:27.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:27.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.937][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:27.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.942][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:27.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:27.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:27.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:27.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.951][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:27.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:27.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.050][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.055][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.097][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-12 16:06:28.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:28.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:28.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:28.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:28.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:28.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:28.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.217][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.269][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:28.270][private$selectFields]
biodb.TRACE[2025-04-12 16:06:28.271][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:28.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:28.273][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:28.274][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.279][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.280][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.282][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.307][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.316][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.321][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.322][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.325][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.326][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.330][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.335][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.340][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.344][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.345][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.349][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.358][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.359][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.377][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.382][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.383][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.391][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:28.393][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:28.394][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.398][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.407][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.421][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.430][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.432][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.444][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:28.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.564][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:28.608][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:28.609][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:28.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:28.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:28.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:28.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:28.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:28.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:28.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:28.627][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:28.631][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:28.632][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:06:28.634][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:28.636][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:06:28.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:28.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:28.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:28.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:28.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:28.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:28.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:28.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:28.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:28.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:28.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:28.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:28.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:28.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:28.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:28.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:28.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:28.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:28.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:28.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:28.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:28.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:28.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:28.724][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:28.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:28.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:28.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:28.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:28.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:28.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:28.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:28.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.858][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:28.859][private$selectFields]
biodb.TRACE[2025-04-12 16:06:28.860][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:28.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:28.862][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:28.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.868][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.869][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.891][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.896][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.905][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.909][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.923][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.932][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.943][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:28.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.946][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:28.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.951][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:28.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.955][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.956][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:28.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.960][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.961][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:28.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:28.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:28.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:28.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:28.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.974][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:28.975][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:28.976][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:28.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:28.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.981][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:28.982][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:28.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.985][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:28.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.990][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:28.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:28.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:28.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:28.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:28.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:28.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.005][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.009][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.019][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.022][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.027][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.032][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:29.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.124][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:29.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:29.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:29.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:29.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:29.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:29.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:29.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:29.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.294][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.346][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:29.347][private$selectFields]
biodb.TRACE[2025-04-12 16:06:29.348][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:29.349][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:29.350][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:29.351][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.356][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.357][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.364][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.366][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.367][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.370][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.384][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.394][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.395][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.399][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.403][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.405][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.407][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.408][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.413][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.422][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.440][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.450][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.454][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.459][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.464][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:29.465][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:29.466][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.470][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.484][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.494][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.503][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.504][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.507][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.517][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:29.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:29.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:29.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:29.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:29.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:29.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:29.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.709][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.813][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:29.814][private$selectFields]
biodb.TRACE[2025-04-12 16:06:29.815][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:29.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:29.817][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:29.818][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.823][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.832][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.846][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.855][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.860][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.864][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.869][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.870][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.874][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.903][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:29.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.906][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.915][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.929][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:29.930][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:29.931][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.936][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:29.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:29.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:29.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.944][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.945][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:29.946][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:29.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:29.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:29.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:29.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.959][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:29.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.968][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:29.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.973][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.974][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:29.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:29.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:29.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.983][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:29.984][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:29.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.987][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:29.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:29.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.013][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.157][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:30.158][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:30.159][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:30.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:30.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:30.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:30.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:30.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:30.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:30.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:30.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:30.181][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:30.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:06:30.184][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:30.186][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:06:30.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:30.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:30.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:30.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:30.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:30.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:30.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:30.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:30.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:30.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:30.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:30.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:30.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:30.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:30.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:30.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:30.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:30.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:30.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:30.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:30.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:30.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:30.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:30.274][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:30.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:30.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:30.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:30.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:30.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:30.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:30.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.304][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.409][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:30.410][private$selectFields]
biodb.TRACE[2025-04-12 16:06:30.411][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:30.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:30.414][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:30.415][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.416][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.419][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.421][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.429][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.434][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.439][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.442][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.446][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.447][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.453][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.455][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.456][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.470][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.475][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.476][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.484][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.494][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.503][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.512][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.516][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.526][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:30.527][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:30.528][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.529][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.533][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.534][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.542][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.543][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.551][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.552][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.560][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.570][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.571][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.574][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.576][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.584][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.609][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.680][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-12 16:06:30.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:30.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:30.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:30.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:30.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:30.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:30.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.840][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.897][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:30.898][private$selectFields]
biodb.TRACE[2025-04-12 16:06:30.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:30.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:30.901][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:30.902][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.907][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.915][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.916][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.940][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.945][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:30.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.949][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:30.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:30.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:30.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:30.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.959][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:30.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:30.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.963][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:30.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:30.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:30.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.973][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:30.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:30.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:30.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:30.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:30.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.986][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.987][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.988][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:30.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:30.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:30.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:30.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:30.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.001][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.003][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.006][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.016][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:31.017][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:31.018][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.023][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.032][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.041][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.046][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.055][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.059][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.060][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.070][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.095][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-12 16:06:31.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:31.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:31.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:31.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:31.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:31.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:31.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.317][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.369][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:31.370][private$selectFields]
biodb.TRACE[2025-04-12 16:06:31.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:31.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:31.373][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:31.375][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.380][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.389][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.408][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.422][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.431][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.435][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.437][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.445][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.458][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.459][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.460][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.463][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.473][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.474][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.476][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.478][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.484][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.487][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:31.488][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:31.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.494][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.495][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.503][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.527][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.532][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.536][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.537][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.541][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:31.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.556][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.709][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:31.710][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:31.711][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:31.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:31.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:31.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:31.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:31.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:31.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:31.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:31.735][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:31.738][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:31.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-04-12 16:06:31.741][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:31.744][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-04-12 16:06:31.747][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:31.751][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:31.752][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-04-12 16:06:31.754][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:31.756][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-04-12 16:06:31.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:31.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:31.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:31.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:31.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:31.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:31.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:31.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:31.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:31.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:31.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:31.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:31.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:31.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:31.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:31.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:31.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:31.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:31.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:31.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:31.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:31.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:31.844][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:31.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:31.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:31.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:31.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:31.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:31.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:31.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:31.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.869][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:31.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:31.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:31.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:31.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.972][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.987][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:31.989][private$selectFields]
biodb.TRACE[2025-04-12 16:06:31.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:31.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:31.992][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:31.993][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:31.994][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:31.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:31.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:31.998][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:31.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.009][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.015][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.017][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.021][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.022][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.035][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.036][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.040][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.049][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.050][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.053][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.058][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.059][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.067][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.077][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.086][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.095][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.097][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.104][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.109][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.111][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.114][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:32.115][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:32.116][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.118][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.121][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.130][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.149][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.158][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.163][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.172][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.311][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:32.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:32.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:32.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:32.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:32.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:32.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:32.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.484][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.493][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:32.494][private$selectFields]
biodb.TRACE[2025-04-12 16:06:32.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:32.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:32.498][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:32.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.503][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.513][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.541][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.542][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.544][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.555][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.556][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.559][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.564][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.565][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.574][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.584][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.588][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.592][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.602][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.603][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.606][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.608][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.613][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.616][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.617][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.621][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:32.622][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:32.623][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.628][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.637][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.645][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.647][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.655][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.659][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.661][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.664][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.665][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.666][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.669][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.674][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.675][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.679][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.694][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.824][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-04-12 16:06:32.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:32.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:32.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:32.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:32.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:32.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:32.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:32.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:32.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:32.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:32.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:32.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:32.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.933][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:32.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:32.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:32.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:32.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:32.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:32.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:32.999][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:33.001][private$selectFields]
biodb.TRACE[2025-04-12 16:06:33.002][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:33.003][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:33.004][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:33.005][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.010][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.011][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.021][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.024][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.025][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.029][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.030][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.035][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.047][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.049][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.057][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.058][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.061][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.062][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.066][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.071][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.080][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.089][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.104][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.107][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.108][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.122][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.123][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.125][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.127][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:33.128][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:33.129][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.133][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.135][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.143][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.147][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.156][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.157][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.172][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.173][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.186][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.301][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:33.350][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:33.351][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:33.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:33.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:33.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:33.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:33.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:33.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:33.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:33.370][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:33.373][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:33.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-04-12 16:06:33.377][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:33.379][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-04-12 16:06:33.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:33.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:33.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:33.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:33.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:33.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:33.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:33.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:33.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:33.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:33.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:33.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:33.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:33.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:33.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:33.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:33.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:33.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:33.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:33.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:33.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:33.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:33.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:33.467][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:33.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:33.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:33.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:33.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:33.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:33.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:33.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:33.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.579][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.607][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.612][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:33.613][private$selectFields]
biodb.TRACE[2025-04-12 16:06:33.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:33.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:33.617][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:33.618][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.619][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.623][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.624][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.626][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.632][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.635][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.636][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.646][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.647][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.650][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.654][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.655][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.659][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.661][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.663][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.664][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.670][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.673][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.675][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.678][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.683][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.684][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.692][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.705][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.706][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.707][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.711][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.720][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.725][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.734][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.735][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:33.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.739][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:33.740][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:33.741][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.742][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.745][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.746][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.747][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.755][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.759][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.769][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.771][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.774][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.775][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.783][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.785][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.788][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.797][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.818][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:33.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:33.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:33.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:33.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.885][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:33.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.928][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:33.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:33.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:33.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:33.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:33.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:33.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:33.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:33.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:33.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:33.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:33.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.115][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.119][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:34.121][private$selectFields]
biodb.TRACE[2025-04-12 16:06:34.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:34.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:34.124][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:34.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.130][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.131][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.139][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.150][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.153][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.158][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.159][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.167][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.169][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.172][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.178][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.180][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.181][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.183][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.186][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.191][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.199][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.200][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.205][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.208][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.214][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.228][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.232][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.238][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.242][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.243][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.246][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:34.248][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:34.249][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.253][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.255][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.263][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.286][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.300][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:34.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:34.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:34.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:34.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:34.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:34.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:34.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.607][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:34.608][private$selectFields]
biodb.TRACE[2025-04-12 16:06:34.609][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:34.610][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:34.611][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:34.612][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.617][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.640][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.641][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.645][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.653][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.654][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.655][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.657][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.659][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.665][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.668][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.669][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.673][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.677][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.687][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.690][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.696][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.697][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.702][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:34.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.705][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.714][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.724][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.725][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.727][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.728][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.730][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:34.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.732][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.733][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:34.734][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:34.735][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.740][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.755][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.769][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.770][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.778][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.783][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.787][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.792][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:34.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:34.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:34.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:34.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:34.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:34.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:34.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:34.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:34.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:34.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:34.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-04-12 16:06:34.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:34.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-12 16:06:34.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:34.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:34.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:34.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:34.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:34.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:34.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-12 16:06:34.976][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-04-12 16:06:34.980][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-12 16:06:34.981][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-04-12 16:06:34.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-12 16:06:34.985][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-04-12 16:06:34.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:34.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:34.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:34.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:34.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:34.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:35.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:35.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:35.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:35.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:35.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:35.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:35.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:35.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:35.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:35.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:35.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:35.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:35.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:35.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:35.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:35.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:35.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-12 16:06:35.074][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-12 16:06:35.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:35.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:35.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:35.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:35.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:35.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:35.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:35.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.104][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.147][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.219][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:35.220][private$selectFields]
biodb.TRACE[2025-04-12 16:06:35.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:35.222][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:35.224][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:35.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.230][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.231][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.261][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.267][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.271][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.276][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.281][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.282][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.285][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.299][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.300][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.314][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.315][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.318][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.328][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.329][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.332][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.342][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.343][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.346][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:35.348][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:35.349][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.358][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.359][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.363][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.364][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.372][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.373][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.378][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.383][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.391][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.395][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.405][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:35.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-04-12 16:06:35.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:35.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:35.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:35.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:35.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:35.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:35.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:35.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.702][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.739][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:35.740][private$selectFields]
biodb.TRACE[2025-04-12 16:06:35.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:35.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:35.743][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:35.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.749][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.750][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.758][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.777][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.778][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.786][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.790][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.797][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.799][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.805][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.807][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.812][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.820][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.821][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.830][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.844][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.845][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:35.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.849][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.858][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.862][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.867][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.871][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.873][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:35.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.876][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:35.877][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:35.878][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.883][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.892][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:35.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.906][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:35.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:35.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.915][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.916][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:35.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.918][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.919][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:35.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:35.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:35.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:35.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.929][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:35.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:35.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:35.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:35.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:35.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:35.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:35.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:35.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-04-12 16:06:36.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-12 16:06:36.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:36.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:36.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:36.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:36.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:36.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-12 16:06:36.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:36.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.233][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:36.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.237][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:36.238][private$selectFields]
biodb.TRACE[2025-04-12 16:06:36.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-12 16:06:36.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-12 16:06:36.242][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-04-12 16:06:36.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:36.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.248][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:36.249][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:36.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.257][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:36.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:36.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.267][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.270][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:36.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:36.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.275][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.284][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.289][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.293][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.294][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.298][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:36.299][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.302][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:36.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:36.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.306][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.307][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:36.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:36.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.316][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:36.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:36.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.319][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.330][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:36.331][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-04-12 16:06:36.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.334][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.335][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.343][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.348][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.352][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.357][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-12 16:06:36.358][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-12 16:06:36.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.362][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:36.368][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-04-12 16:06:36.370][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:36.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:36.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.373][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.374][ef$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:36.376][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:36.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.383][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:36.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:36.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.394][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.397][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.406][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.411][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.415][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.416][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.420][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-04-12 16:06:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:36.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-12 16:06:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-12 16:06:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-04-12 16:06:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-04-12 16:06:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-04-12 16:06:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-12 16:06:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-12 16:06:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-12 16:06:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-12 16:06:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-12 16:06:36.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-12 16:06:36.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-12 16:06:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-04-12 16:06:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-12 16:06:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-12 16:06:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-04-12 16:06:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-04-12 16:06:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-04-12 16:06:36.580][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-12 16:06:36.581][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-12 16:06:36.587][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:36.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:36.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.591][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:36.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:36.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-12 16:06:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-12 16:06:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-12 16:06:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-12 16:06:36.605][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-12 16:06:36.607][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-04-12 16:06:36.608][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-04-12 16:06:36.609][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-12 16:06:36.610][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-12 16:06:36.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-12 16:06:36.612][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-12 16:06:36.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-12 16:06:36.614][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-12 16:06:36.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1396 ]
> 
> proc.time()
   user  system elapsed 
  88.18    7.10  176.37

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck'
* using R version 4.5.0 RC (2025-04-04 r88126 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package 'biodbChebi' ...
** this is package 'biodbChebi' version '1.13.0'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)